Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1646 ATGGCGGATTCTTCCTCTTCCTCTCCCCCTGCAACCACCTCCTCCTCTCTCGTATGCCCCACCGTCCTTATCCGGTACGGTTGCCATTCATCCCACGGCTCCCTCTTTCCCGGCACTGGCATGCTGAACCCAAGCTATCCAAACCCTGGGGTTCAGCCTCCGGGTGTTAGCTCCGTTTCGGGTGGTGCGGGAGCTGTTACAGTTCCAATGCCGCAACCGATGATGGGTTATCAACTTCAACCGGGTCAGGTTCCGAATCCGGCGATGATGAGGCCGTACGCCAATATGCCGAATGGTTTCGCAGCTGGTGCTCCTCAAGGACCCTTTCCTATCCCTGGAGTTCATCGTTTTCCTCCTTCTATGATTCGGATGCCTTTTCCTCCACTTCCACCTGGTGCTATGGGCATGATTCCAGCAATGCCACGACCTCCTGTTCCAGGGATTCCTGGTGTTCGTCCGATCATCCCTCCTGTTGTTAGGCCTTCTGTTCTCCCAAGTGTTACACCTGCGGAAAAATCACAAACTACAATTTATATTGGCCGAATTGCACAATCAGTGGAAAATGATTTCATGCTATCCTTTCTTCAGCTATGTGGACCAGTGAAGAGTTGGAAACGGGCCCAAGATCCTACAGATGGAACTCCTAGAACCTTTGGATTCTGCGAGTTTGAGTCTGCTGAAGGTGTTCTTCGTGCTCTACGATTACTGACGAAGTTAAACATTGATGGACAAGAACTAGTGCTAAATGGTACTCAAGCAACAAGAGATTATCTGAAGCGTTATCTTGAAAAGAAAGCAGAGAACTCAAAGAAACTGAAAGAAACACAACTTTCAGAGACTAAGGAAGAAGAAGCTAAAAATGAAACTTCAAAGCCCCCTGCAGAGGATTCAAAGGAGGACCATGATTCAGGGGAAAAAGAAGATCATGCCATTGCCTGTTCTGCAGTTTTAAGTGATGAAGATAGAGATGCTGATCGAGAGGCATCAGAAAAGCTTACAAATGCACTGGAGGAGAGGTTGAAGTCTAGACCTCTGCCACCACCTCCCCTACTGCCACCCGCTGATGTATCTGGTAATTCAAATGCTGAGCCATCTGCTAAATTGAAAGATGGTGAATCTGACGCTGATATTTTGAAAAGTGATGCAGCTGATGATAGAAATGATGATGACACAATTAGCGACAATAAACAAATTAGTGAGCATGACAAGCCTGAAACAAGCTCACCTGACAGAAGTAGAAGGTATGACAGGAGAAGTCGAGAAAGAGACAGGGAGCGGGATCTGGAAAGGGAGAAGGAGCGGGAAATTGAGAGATATGAAAGAGAGACAGAGCGGGAGCGAGTTAGGAAAGAGAGAGAACAAAGGAGAAAGATTGAGGAGGCCGACCGACAGTATGAAGAATGTCTTAAAGAGTTGGAATATCGAGAAAGAGAGAGAGAAAAACAGAGGCATTATGAGAAGGAGAGGGAGAAAGAGAAAGAGCGTAAAATGAAGAAAGAGATATTGTATGATGAAGATGACGAGGATGATGATTCAAGAAGAAAATGGCGCAGAGGTGCTCTGGAGGAAAAGAGGAAGAAGAGGTCCAGAGAAAAGGAAGATGATTCGGTTGATAGACAGAGAGAGGAAGAAGAAATGGCTGAGGCCAAGAGGAAGGCTGAGGAGGAACAGCTGCAGATACAGAAAGATTCACTGAAACTTCTATCTTGTCAGATGATGAGTGTCGACGAGAAAACTGTTCTTGCTGAAGAATCCGCTAATGAGATTAAAGTTATTGCTTCTGAACGTGATTCTGAGCCTGAAGGTTTTAGATCCTCGGGAAATCCCTTTTCTAGCTTTGAGAACCATATAGGGGATGGGATCTTACAAAACGGTAGTGGTGATGAATTAAGTACGATACCATCAGAGGCTCGACAGATTGGAGGCGTGCCTGAAAAAAGGTTAGGATTTGGTATAGTAGGATCTGGAAAGCGGACTGCTGTACCTTCAGTTTTTCATGAGGAGGAGGAGGATGAAGCACAGAAAGAGAAGAAGATGAGGCCACTGGTTCCAATTGATTACTCAGCTGAGGAACTCCAGGCTGTGCAACCTGCCAGTACTACTGGGGCTTTGCCACCAAATTTAGCTGCAGCAGCCGAGTTTGCAAAACGTATATCAAATGTTAATTCCAAAGAAGGGAAGCCTGACAATGAAAGGGATCGAGGAAGGCGTTCCAGTGAAAAGTCTAGTCAGCGGGATAGAGACCGAAATGTTGACAGAGATAAGGAGCGAGACCATGTTTTGGATAAAGTAAAAACACCAGATAACAAAAAACTCTTGGATGCAAAACAGTTGATTGATATGATTCCGAAGACGAAGGAGGAGTTATTCTCATATGATATAAATTGGGCTATTTATGAGAAGCATGCACTACATGAGAGAATGAGACCGTGGATTTCAAAAAAGATAACAGAGTTTTTGGGGGAGGAAGAAACCACTCTCGTCGATTACATTGTTTCAAGTACTCAGGAACACGTAAAGGCGTCACAAATGCTGGAGCTGCTTCAGTCAATTTTGGATGAAGAAGCTGAAATGTTTGTTCTGAAGATGTGGAGAATGCTCATCTTCGAAATAAAAAAGGTAGAGACTGGTCTACCTTTCAGATCAAAAGCATGA 2655 45.08 MADSSSSSPPATTSSSLVCPTVLIRYGCHSSHGSLFPGTGMLNPSYPNPGVQPPGVSSVSGGAGAVTVPMPQPMMGYQLQPGQVPNPAMMRPYANMPNGFAAGAPQGPFPIPGVHRFPPSMIRMPFPPLPPGAMGMIPAMPRPPVPGIPGVRPIIPPVVRPSVLPSVTPAEKSQTTIYIGRIAQSVENDFMLSFLQLCGPVKSWKRAQDPTDGTPRTFGFCEFESAEGVLRALRLLTKLNIDGQELVLNGTQATRDYLKRYLEKKAENSKKLKETQLSETKEEEAKNETSKPPAEDSKEDHDSGEKEDHAIACSAVLSDEDRDADREASEKLTNALEERLKSRPLPPPPLLPPADVSGNSNAEPSAKLKDGESDADILKSDAADDRNDDDTISDNKQISEHDKPETSSPDRSRRYDRRSRERDRERDLEREKEREIERYERETERERVRKEREQRRKIEEADRQYEECLKELEYREREREKQRHYEKEREKEKERKMKKEILYDEDDEDDDSRRKWRRGALEEKRKKRSREKEDDSVDRQREEEEMAEAKRKAEEEQLQIQKDSLKLLSCQMMSVDEKTVLAEESANEIKVIASERDSEPEGFRSSGNPFSSFENHIGDGILQNGSGDELSTIPSEARQIGGVPEKRLGFGIVGSGKRTAVPSVFHEEEEDEAQKEKKMRPLVPIDYSAEELQAVQPASTTGALPPNLAAAAEFAKRISNVNSKEGKPDNERDRGRRSSEKSSQRDRDRNVDRDKERDHVLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYDINWAIYEKHALHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETGLPFRSKA 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 53150725 53156361 + Hsped.10g16460.1 Hepe10g1646 582193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1646 884 Coils Coil 263 283 - -
Hepe10g1646 884 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 37 884 IPR053294 -
Hepe10g1646 884 MobiDBLite consensus disorder prediction 592 649 - -
Hepe10g1646 884 MobiDBLite consensus disorder prediction 604 633 - -
Hepe10g1646 884 MobiDBLite consensus disorder prediction 268 338 - -
Hepe10g1646 884 Pfam RNA recognition motif 177 246 IPR000504 GO:0003723(InterPro)
Hepe10g1646 884 ProSiteProfiles PWI domain profile. 787 884 IPR002483 -
Hepe10g1646 884 Gene3D - 167 291 IPR012677 -
Hepe10g1646 884 Gene3D PWI domain 763 879 - -
Hepe10g1646 884 SMART pwi_2 800 873 IPR002483 -
Hepe10g1646 884 MobiDBLite consensus disorder prediction 367 558 - -
Hepe10g1646 884 MobiDBLite consensus disorder prediction 268 558 - -
Hepe10g1646 884 CDD RRM_RBM25 175 258 IPR034268 -
Hepe10g1646 884 MobiDBLite consensus disorder prediction 719 759 - -
Hepe10g1646 884 FunFam RNA Binding Motif protein homolog 763 879 - -
Hepe10g1646 884 MobiDBLite consensus disorder prediction 720 759 - -
Hepe10g1646 884 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 260 IPR000504 GO:0003723(InterPro)
Hepe10g1646 884 SUPERFAMILY RNA-binding domain, RBD 169 247 IPR035979 GO:0003676(InterPro)
Hepe10g1646 884 Coils Coil 418 495 - -
Hepe10g1646 884 CDD UDM1_RNF168 512 569 - -
Hepe10g1646 884 MobiDBLite consensus disorder prediction 661 682 - -
Hepe10g1646 884 SMART rrm1_1 176 249 IPR000504 GO:0003723(InterPro)
Hepe10g1646 884 Coils Coil 532 566 - -
Hepe10g1646 884 SUPERFAMILY PWI domain 804 873 IPR036483 -
Hepe10g1646 884 MobiDBLite consensus disorder prediction 662 682 - -
Hepe10g1646 884 Pfam PWI domain 807 870 IPR002483 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1646 K12822 - - csv:101214372 989.949
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe09g1210 Hepe-Chr9:15008596 Hepe10g1646 Hepe-Chr10:53150725 0.0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47