Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1648 ATGATTCCAAAATCTAGTAACTCCGATCGCCGGATACTGACGTCACCGGCGCTCCGACCGTGTGAATGCACAGCTCCGGCGACGCTATTGAATTCCTTAATCAATGTCAGTCGCAACATTTGCGGCTACAGATCCAAATTCATCGGCAGCAACAAGCGAAACGCCACCGATACGATTCGTCAAATCGGAATCCTTCTGACGTTGTTCGAGGAAATTCAAGATCGGAAATCCAAAGACCTGCCGGATTCCGTCGCGTTAGTCTTGTCGGAGCTTAATTTGATCTTCCAGAAGATTCTGTATCTCTTGGAGGATTGTGCCCTAGAAGGCGCCCGTTTGTTGATGCTGATGAAATCCGAACTCGTCGCGAGTCGGTTCCGGGTTTTGACCCGATCCATCACTTTGGCTTTGGATGTTTTGCCGTTGGATTCGATTGATGTTCCGATTGAAGTTATAGAGCATGTGGAATTGGTGATCAAACAAGCACGAAGGGCGAAATTCGAAGTCGATCGTGAAGATGAAGAGATTTTAAACGAGGTACGATTAATTTTGACTCTTTTTGATTTGGGAATTACTCCGGATAATACTCAAATCAAACGCGTTCTTGATTATATTGGGATTGAAAAGTGGAGTTCGTGTAACAAAGAGGCGAAATTCTTGGATTCGGAAATCGAACTCGAATCGTCGTCTCTGGATAAACGAGAGCTTTCCCTTTTAAGCACTTTACTGAGTTTGATGAATTACTCTCGCTGTATATTGTTCGATGTTGTCGATTGCGAATTCGGGTTTCGACCTGACATCAAACCCCGAATCGAAATTCTAGATGGGTTATCCCCAGATGATTTTCGCTGCCCAATTTCGTTTGATTTCATGATTGATCCTGTCACGGTGGCGACGGGGCATACTTACGATCGATCCTCGATTCAAAAGTGGCTGAGATCGGGAAATTCCATCTGCCCAATTACAGGGGAGAGATTGAATAACAGAGATTTAGTCCCGAATTTGTCTCTCCGTCGGATAATCCGGCAATATTGTTCGGAAAATTCAATCCCTTTCCCGGAATCAAGCAAACAAAAACGGGATATAACGAGAACGATCGTTGCTGGAAGTTCAACATCCGAGAAGATTATTGGGGTTTTGGCGAAATTTTTAGCTCGCCTCCTCGAATCAGGAACGGACGATGAGAAAAACAGAGCCGCTTTTGAAATCAAGCTTCTATCAAAAGCAAGCATTTTCAATCGTTCTTGCTTGGTGGAAATTGGGTTGATTCCAAATTTGTTAAAGCTTTTGAGATCACCAGATGTTTTGACGCAAAAGAACGCCATTGCAGCTGTGTTGAATCTCTCAAAGCATTCGAAAAGCAAAAGAGTGATAGCAGAAAACAGAGGATTGGAGGAAATTGTAAATGTTTTGAAAATGGGTCACAGAATTCAATCACGACAAATTGCTGCCGGCGCTCTATTTTACATGGCATCCGTTGAAGACTACAGAAAGCTAATCGGAGAAATCCCAGATGCGTTATCGGGTTTGATGAGCTTGCTGGAGGACGAAGCCGATCGTAGTAAAAAGAATGCAATGGTTGCATTATATGGGCTACTAATGCACCCGGACAACCACCGGAAAGTGCTGTCCGCCGGAGTGGTTCCATTGTTGGTGAATTTGATAGAAAAAACCGAAAGAGAGAGTCTGATTGCTGATTCAATGGAGATTCTCGGATCCCTGGCGGAGAAGCCCGATGGGGCGGCGGAGATTTTAAGAAGTGGGGCTTTGAATTCAATCATTGGGTTTGTGGATTCGTGTAGTTCAAGAACAGGACAAGAATACTCTGTTTGTTTATTGGTAGCTCTGTGCATCCATGGCGGATCTGAAGTAGTTGGGATGATTTCGAAAAGTAAAACTCTGATTTCATCTCTATACAATTTGGTGAGTAAAGGAACAAATCGAGCGAGCTGGAAGGCGAGTTCTTTGATTCGAGTCGTCCATGAGTACTGTGAATTTATGTCCGATCTTCGTCATTCGCAAGAACGAATCGTTCAAGCCCGGTAA 2043 44.05 MIPKSSNSDRRILTSPALRPCECTAPATLLNSLINVSRNICGYRSKFIGSNKRNATDTIRQIGILLTLFEEIQDRKSKDLPDSVALVLSELNLIFQKILYLLEDCALEGARLLMLMKSELVASRFRVLTRSITLALDVLPLDSIDVPIEVIEHVELVIKQARRAKFEVDREDEEILNEVRLILTLFDLGITPDNTQIKRVLDYIGIEKWSSCNKEAKFLDSEIELESSSLDKRELSLLSTLLSLMNYSRCILFDVVDCEFGFRPDIKPRIEILDGLSPDDFRCPISFDFMIDPVTVATGHTYDRSSIQKWLRSGNSICPITGERLNNRDLVPNLSLRRIIRQYCSENSIPFPESSKQKRDITRTIVAGSSTSEKIIGVLAKFLARLLESGTDDEKNRAAFEIKLLSKASIFNRSCLVEIGLIPNLLKLLRSPDVLTQKNAIAAVLNLSKHSKSKRVIAENRGLEEIVNVLKMGHRIQSRQIAAGALFYMASVEDYRKLIGEIPDALSGLMSLLEDEADRSKKNAMVALYGLLMHPDNHRKVLSAGVVPLLVNLIEKTERESLIADSMEILGSLAEKPDGAAEILRSGALNSIIGFVDSCSSRTGQEYSVCLLVALCIHGGSEVVGMISKSKTLISSLYNLVSKGTNRASWKASSLIRVVHEYCEFMSDLRHSQERIVQAR 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 53165737 53168037 - Hsped.10g16480.1 Hepe10g1648 582195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1648 680 Gene3D - 30 142 IPR036537 GO:0007166(InterPro)
Hepe10g1648 680 FunFam RING-type E3 ubiquitin transferase 277 349 - -
Hepe10g1648 680 SUPERFAMILY RING/U-box 275 352 - -
Hepe10g1648 680 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 545 588 IPR000225 GO:0005515(InterPro)
Hepe10g1648 680 CDD RING-Ubox_PUB 278 330 IPR045210 -
Hepe10g1648 680 Gene3D - 355 678 IPR011989 -
Hepe10g1648 680 Pfam U-box domain 278 348 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe10g1648 680 SMART arm_5 408 449 IPR000225 GO:0005515(InterPro)
Hepe10g1648 680 SMART arm_5 450 491 IPR000225 GO:0005515(InterPro)
Hepe10g1648 680 SMART arm_5 534 575 IPR000225 GO:0005515(InterPro)
Hepe10g1648 680 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 420 462 IPR000225 GO:0005515(InterPro)
Hepe10g1648 680 SUPERFAMILY ARM repeat 379 659 IPR016024 -
Hepe10g1648 680 PANTHER U BOX DOMAIN-CONTAINING 50 660 - -
Hepe10g1648 680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 350 IPR013083 -
Hepe10g1648 680 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe10g1648 680 SMART Ubox_2 280 343 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1648 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1253 Hepe-Chr8:13367380 Hepe10g1648 Hepe-Chr10:53165737 1.08e-17 dispersed
Hepe04g1801 Hepe-Chr4:72958917 Hepe10g1648 Hepe-Chr10:53165737 7.62e-37 transposed
Hepe10g1648 Hepe-Chr10:53165737 Hepe07g2239 Hepe-Chr7:66798880 1.27e-221 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g734 . . . . . . . Bma15g00190 . . . . . . Sed06g1631 . Cpe01g01524 Bhi07g01714 Tan04g1218 Cmetu10g0188 Lac13g0211 Hepe10g1648 . . Cla05g02532 Cam05g2722 Cec05g2753 Cco05g2794 Clacu05g2724 Cmu05g2578 Cre05g2692 Cone2ag0897 . . . Lsi04g00538 Csa05g02344 Chy10g00911 Cme10g00515 Blo06g00872 . . . . . . . . . . Cma04g01724 . Car04g01755 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002583 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 1 2 3 2 2 2 2 2 2 2 2 2 3 2 1 59