Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1669 ATGTCCGTATCGATTTCCAATTGCTTCTCTGACTTACTCTGCCAGGAGGATTCCTCCGGCGTCCTGTCCGGCGAGTCGCCGGGATATTCTTCCGACCTCGATTCTCCAGGCTGTGTCGAGGAATCTATCGCCGTCTTCATCAAGGACGAGCGTCACTTCGTCCCCGATTACGACTGTTTGTTGCGCTTCCAATCTCCGTCGCTGGACGCCGCCGCTAGATTAGACTCCGTTGCATGGATTCTTAAGGTTCAAGGTTATTACGGTTTTCAGCCGTTGACGGCGTATCTCTCCGTCAACTACTTGGATCGATTCCTTTCTTCACGCCGCTTGCCGCAAACAAATGGGTGGCCATTGCAACTCCTCTCTGTTGCTTGCCTCTCACTGGCTGCTAAAATGGAGGAACCTCTTGTTCCTGCTTTACTGGATCTTCAGATTGAGGGAGCCAAATATATATTTGAACCCAGAACAATATGCAGAATGGAATTACTGGTGCTGAGGGTATTAGATTGGCGGCTGCGTTCTATAACGCCGTTCAATTTCATCGCATTCTTTGCTTGCAAGCTCGATCCATCGGGGGATTTCATCGGATTTCTCATTTCAAGAGCTACAGAAATCATACTATCGAATATCCGAGAGGTAATATTTCTGGAGTATTGGCCATCGTGTATTGCGGCTGCAGCCTTGCTTTGTGCAGCAAATGAAGTCCAGAATTTGTCTGGTGTCAATCCAGAACATGCTGCATCATGGTGCAGTGGTCTTAGGAAAGAAAGTATCACCGTCTGCTACCGGTTAATGCAAGAGATTGTGCTTGCCCCCAAAATCTTACCTCGGTTTAGAGTGACAGTTCGCACTATAATGAGATCTAGCGACTCCTCGTCGTCGTCTTCGTCGTCACCGAACAAAAGAAGAAAATTAAACCAGAGCCCATCTGAGTAG 936 48.08 MSVSISNCFSDLLCQEDSSGVLSGESPGYSSDLDSPGCVEESIAVFIKDERHFVPDYDCLLRFQSPSLDAAARLDSVAWILKVQGYYGFQPLTAYLSVNYLDRFLSSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQIEGAKYIFEPRTICRMELLVLRVLDWRLRSITPFNFIAFFACKLDPSGDFIGFLISRATEIILSNIREVIFLEYWPSCIAAAALLCAANEVQNLSGVNPEHAASWCSGLRKESITVCYRLMQEIVLAPKILPRFRVTVRTIMRSSDSSSSSSSSPNKRRKLNQSPSE 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 53378694 53381562 - Hsped.10g16690.1 Hepe10g1669 582216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1669 311 ProSitePatterns Cyclins signature. 73 104 IPR048258 -
Hepe10g1669 311 SMART cyclin_7 78 166 IPR013763 -
Hepe10g1669 311 CDD CYCLIN_AtCycD-like_rpt1 72 170 - -
Hepe10g1669 311 MobiDBLite consensus disorder prediction 289 311 - -
Hepe10g1669 311 Pfam Cyclin, N-terminal domain 43 173 IPR006671 -
Hepe10g1669 311 FunFam D2/4-type cyclin 56 173 - -
Hepe10g1669 311 SUPERFAMILY Cyclin-like 157 272 IPR036915 -
Hepe10g1669 311 PANTHER CYCLINS 39 268 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Hepe10g1669 311 SUPERFAMILY Cyclin-like 36 172 IPR036915 -
Hepe10g1669 311 Gene3D - 56 173 - -
Hepe10g1669 311 Gene3D - 47 262 - -
Hepe10g1669 311 SMART Cyclin_C_2 175 300 IPR004367 -
Hepe10g1669 311 CDD CYCLIN_AtCycD-like_rpt2 175 265 - -
Hepe10g1669 311 Pfam Cyclin, C-terminal domain 175 273 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0403 Hepe-Chr7:4097261 Hepe10g1669 Hepe-Chr10:53378694 6.49e-64 dispersed
Hepe08g1610 Hepe-Chr8:23522607 Hepe10g1669 Hepe-Chr10:53378694 1.00e-146 dispersed
Hepe10g1669 Hepe-Chr10:53378694 Hepe10g0446 Hepe-Chr10:5063334 1.04e-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1669 K18810 - csv:101209417 524.242