Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1675 ATGGAGCTCCTGTACTTCTTAATCACCACCTCCATTTTTGTGCTTTTCACCTTCTCTCTGAAGCTTGAAGCTACCATCCATGGCACAAGCCTCACTTCCCTTCAAACCAATCAAAATTCTTCACTCAGACACCAAATTCTCGAGCTTGCCAATAATCCCACTACTCTAAATTGGATGAAGTCAATAAGGAGAAAAATCCACGAGAACCCAGAACTTGCTTATGAAGAATTTGAAACCAGTAGCCTTATTAGACAGGAGCTTGACAATCTCGGCGTTTCTTATCGATGGCCGGTCGCCGGTACCGGCGTCGTGGCTTCGGTCGGCTCTGGCTCTCCTCCCTTTGTCGCTCTAAGAGGAGATATGGATGCTTTGCCTATTGAGGAATTGGTGGAATGGGAGCATAAGAGCAAAGTGAAGGGGAAAATGCATGCTTGTAGTCATGATGCTCATGGCACTGTTGTTCTTATATTTCAGCCAGCGGAGGAGAGAGGAGGAGGAGCAAAAGACATGATAAAAGAAGGCGTCCTTGATGGTGTAGAAGCTATATTTGGGCTGCACATTGTGCATAAATATCCAGTGGGCGTTGTCGCTTCACGTCCCGGCGAGTTTCTTGCAGGGTGTGGAAGCTTCAAAGCAAAGATAAAGGGGAAAGGGGGGCATGCAGCAAATCCACATCATTCAATTGATCCTGTTTTGGCAGCTTCAGCAGCAATTGTTAGTCTGCAAAACATAGTCTCAAGAGAGATAGACCCTTTAGATTCCCAGGTGGTTTCTGTGGCCATTGTTCAAGCAGGAACTGCACTCAATGTCATCCCGGACTCGGCCACCATTGCTGGTACCTTCAGAGCTTTCAGCAAGAAGAGCTTCAATGCTCTCAGAGATAGAATAGAACAGGTCATAAACGGGCAGGCAGCGGTGCATCGGTGCACTGCAGAGATTGATTTCCTAGGAAAGGATCACCCGACAATTCCTCCGACTATAAATGATGAGAAAATTTATGAACATGCTCGTCGTGTCTCTATCGAAATTGTAGGAAAAGAAAAAACAGAAGTATCTCCTAGCTTCATGGGAAGTGAAGATTTTGCTTTCTTTTCAGAGAGAGTGCCGGGATCGTTCTTATTTCTAGGCACATATAATGAGAGGATCGGTGCAATACATCCTCCACACAGCCCTCACTATAAAATTGATGAAAATGTGCTTCCTATTGGCGCAGCAATTCATGCAGCATTTGCATATTCTTATCTCTTGAATTCATCATCAACATCCCATTCTTTTTGTGACCACTGA 1287 45.07 MELLYFLITTSIFVLFTFSLKLEATIHGTSLTSLQTNQNSSLRHQILELANNPTTLNWMKSIRRKIHENPELAYEEFETSSLIRQELDNLGVSYRWPVAGTGVVASVGSGSPPFVALRGDMDALPIEELVEWEHKSKVKGKMHACSHDAHGTVVLIFQPAEERGGGAKDMIKEGVLDGVEAIFGLHIVHKYPVGVVASRPGEFLAGCGSFKAKIKGKGGHAANPHHSIDPVLAASAAIVSLQNIVSREIDPLDSQVVSVAIVQAGTALNVIPDSATIAGTFRAFSKKSFNALRDRIEQVINGQAAVHRCTAEIDFLGKDHPTIPPTINDEKIYEHARRVSIEIVGKEKTEVSPSFMGSEDFAFFSERVPGSFLFLGTYNERIGAIHPPHSPHYKIDENVLPIGAAIHAAFAYSYLLNSSSTSHSFCDH 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 53434890 53442322 - Hsped.10g16750.1 Hepe10g1675 582222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1675 428 PIRSF Amidohydrol_AmhX 149 419 IPR017439 GO:0016787(InterPro)
Hepe10g1675 428 PIRSF Amidohydrol_AmhX 44 155 IPR017439 GO:0016787(InterPro)
Hepe10g1675 428 PANTHER PEPTIDASE M20 FAMILY MEMBER 32 419 IPR017439 GO:0005783(PANTHER)|GO:0009850(PANTHER)|GO:0010179(PANTHER)|GO:0016787(PANTHER)|GO:0016787(InterPro)
Hepe10g1675 428 FunFam N-acetyldiaminopimelate deacetylase 205 322 - -
Hepe10g1675 428 SUPERFAMILY Zn-dependent exopeptidases 55 417 - -
Hepe10g1675 428 Gene3D Zn peptidases 152 270 - -
Hepe10g1675 428 Pfam Peptidase family M20/M25/M40 116 411 IPR002933 GO:0016787(InterPro)
Hepe10g1675 428 Pfam Peptidase dimerisation domain 206 304 IPR011650 -
Hepe10g1675 428 CDD M20_IAA_Hyd 59 415 IPR044757 GO:0009850(InterPro)|GO:0016787(InterPro)
Hepe10g1675 428 NCBIfam amidohydrolase 150 403 IPR017439 GO:0016787(InterPro)
Hepe10g1675 428 Gene3D Zn peptidases 278 419 - -
Hepe10g1675 428 SUPERFAMILY Bacterial exopeptidase dimerisation domain 206 315 IPR036264 -
Hepe10g1675 428 Gene3D Zn peptidases 31 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1675 K14664 - - csv:101208682 700.279
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe09g0837 Hepe-Chr9:8235303 Hepe10g1675 Hepe-Chr10:53434890 1.48e-154 dispersed
Hepe09g0838 Hepe-Chr9:8245827 Hepe10g1675 Hepe-Chr10:53434890 1.48e-154 dispersed
Hepe10g1675 Hepe-Chr10:53434890 Hepe02g1465 Hepe-Chr2:18993906 3.65e-162 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g786 . . . . . . . . . . . . . . Sed06g1602 . . Bhi07g01672 Tan04g1177 Cmetu10g1745 Lac13g0238 Hepe10g1675 . . Cla05g02511 Cam05g2695 Cec05g2729 Cco05g2763 Clacu05g2698 Cmu05g2552 Cre05g2667 . . . . Lsi04g00510 Csa05g02371 Chy10g00935 Cme10g00490 . . Bda07g01569 . Bpe11g01737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011718 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30