Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1680 ATGGCCAGAATCCCTGTTTTCTCCCGCCGGCGGAGGTCCGATCAGATCGACGCTCTAGATCGTTTGATCCCCACCTCTGATTCCGAGGTTCATGTTCTCGCCGTCGACGATAGTCTCATCGATCGTACAGTAATTGAACGTCTCCTCCGCCTCACCGCCTGCCGTGGTAAGTTCAATTTCTTTACAAATTTCATCCCTTTTTTCATTTTCCTTTCTGGGTTTTGTTTGTTTCTCGAGAAATTCAATTGGGTTCTGTTTGGAATTGCAGTTACTGCAGTGGATAGTGGAATTAGAGCTCTACAATATCTCGGATTACAAGACGAAACAAAAAAACAGAGCTTGAAGGTTGATATGATCATCACTGATTACTGTATGCCCGGAATGACAGGCTACGAATTGCTCAAGAAAATTAAGGAATCTTCAACACTGAGAGAGATTCCGGTGGTGATTATGTCGTCGGAAAACGTGGTGGCGAGGATAGATAGATGTTTAGAGGAAGGAGCAGAGGATTTCATAGTGAAACCGGTGAAATTATCAGATGTGAAACGGCTCAGGGAATATATGGTGGGGGACGAAAGGATCGGAAGTGAAAGAAGTGGCATCAACAAAAGGAAGCTACCAGAGCCGTGTGATCAAACCTCATCTGATTCCTTTCCATCATCACCGTTAGATTCGCTTCAATCCACACCATCATCATCAGAGCCATCATCTCCCACATCCACTCTTCAATCCGACGGCTCTAAATGA 747 44.98 MARIPVFSRRRRSDQIDALDRLIPTSDSEVHVLAVDDSLIDRTVIERLLRLTACRGKFNFFTNFIPFFIFLSGFCLFLEKFNWVLFGIAVTAVDSGIRALQYLGLQDETKKQSLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREYMVGDERIGSERSGINKRKLPEPCDQTSSDSFPSSPLDSLQSTPSSSEPSSPTSTLQSDGSK 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 53515929 53517115 + Hsped.10g16800.1 Hepe10g1680 582227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1680 248 CDD REC_typeA_ARR 32 184 - -
Hepe10g1680 248 Pfam Response regulator receiver domain 87 181 IPR001789 GO:0000160(InterPro)
Hepe10g1680 248 SUPERFAMILY CheY-like 86 188 IPR011006 -
Hepe10g1680 248 SMART REC_2 67 185 IPR001789 GO:0000160(InterPro)
Hepe10g1680 248 Gene3D - 30 214 - -
Hepe10g1680 248 MobiDBLite consensus disorder prediction 211 248 - -
Hepe10g1680 248 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 230 IPR045279 GO:0009736(InterPro)
Hepe10g1680 248 MobiDBLite consensus disorder prediction 197 248 - -
Hepe10g1680 248 ProSiteProfiles Response regulatory domain profile. 31 189 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g1680 Hepe-Chr10:53515929 Hepe03g0399 Hepe-Chr3:5697466 1.01e-06 dispersed
Hepe10g1680 Hepe-Chr10:53515929 Hepe09g0164 Hepe-Chr9:1312143 1.18e-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56539 PF00072 Response_reg 4.60E-18 CL0304 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1680 K14492 - csv:101209506 299.671