Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1689 ATGAACGGGTGGCGCACGTGTTCGTTGTGTGGGAACGATGGGCACAACTCCCGCACGTGTCCGGAGGGAGACGGCGGCGGCGGCGGTGGCGGAGGAGGAATCATGTTGTTTGGGGTGAGGATGACGGAGGGAATTAGTGGGTCGTCGTTTAGGAAGAGCGTTAGTATGAATAATTTGTCCCAATACGATCTGCCTCAGAGTCAAGATTCCAATAACGCCGCCGATGCTGGATATGCTTCCGACGACGTCGTTCACCCATCTGACCGTTGCAGCGGCCGTAAGAGAGGGATTCCGTGGACGGAGGAAGAACATAGGCTGTTTTTGTTGGGATTAGAGAAGGTTGGGAAGGGAGATTGGAGAGGGATTTCCAGGAATTTTGTGAAGACGCGTACGCCGACTCAGGTGGCCAGTCATGCTCAGAAATACTTTCTCCGCCGGAATAATTTCAATCGGAGACGCCGTAGATCCAGCCTTTTCGATATCACCGCTGACACTTTCACAAGCTCATCTATGGAAGACGATTTAGTATATTCCGGCCACGAGGCTATGCCGCCACCGTTCCCACCGCCGCAGCCACAAAAAGACAACGAGCCCGGGAATTTGTCGGCGAAGATTCATCCAGCAAAGCCACCTCCAGCCGCCGCGGCCGGCGGCGCCGAGAGCAATTCCGTGGAGAGTAGCCTAACACTGCATTCCAAAATCATTCGTCCAATACCAATGCTGCCTCTATCTCCATATCCAAAATTTGCTGAATTGAACATTAACGAGAGAACCCCAGAAGACCCTTTGCCTCTAACTTTAAAGCTCTCAATTTCACACTCCGGGGGACAGTCACCGACAGCGGCGGCGGCTTCACAATCGTCCGGCAGTTTTCAGACAATGTCCGGCGGCGGAGACAACATAAACATTGTCAGTGTTGCTTGA 924 53.14 MNGWRTCSLCGNDGHNSRTCPEGDGGGGGGGGGIMLFGVRMTEGISGSSFRKSVSMNNLSQYDLPQSQDSNNAADAGYASDDVVHPSDRCSGRKRGIPWTEEEHRLFLLGLEKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNFNRRRRRSSLFDITADTFTSSSMEDDLVYSGHEAMPPPFPPPQPQKDNEPGNLSAKIHPAKPPPAAAAGGAESNSVESSLTLHSKIIRPIPMLPLSPYPKFAELNINERTPEDPLPLTLKLSISHSGGQSPTAAAASQSSGSFQTMSGGGDNINIVSVA 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 53605750 53607840 + Hsped.10g16890.1 Hepe10g1689 582236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1689 307 CDD SANT 98 142 IPR001005 -
Hepe10g1689 307 SMART sant 95 145 IPR001005 -
Hepe10g1689 307 ProSiteProfiles SANT domain profile. 99 147 IPR017884 -
Hepe10g1689 307 FunFam transcription factor MYB1R1 97 148 - -
Hepe10g1689 307 Pfam Myb-like DNA-binding domain 98 143 IPR001005 -
Hepe10g1689 307 ProSiteProfiles Zinc finger CCHC-type profile. 7 22 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe10g1689 307 Gene3D - 97 149 - -
Hepe10g1689 307 PANTHER TRANSCRIPTION FACTOR KUA1 5 206 IPR052245 GO:0009723(PANTHER)|GO:0009739(PANTHER)
Hepe10g1689 307 MobiDBLite consensus disorder prediction 177 222 - -
Hepe10g1689 307 MobiDBLite consensus disorder prediction 272 307 - -
Hepe10g1689 307 MobiDBLite consensus disorder prediction 61 75 - -
Hepe10g1689 307 ProSiteProfiles Myb-like domain profile. 98 143 IPR001005 -
Hepe10g1689 307 MobiDBLite consensus disorder prediction 61 95 - -
Hepe10g1689 307 NCBIfam myb-like DNA-binding domain, SHAQKYF class 94 145 IPR006447 GO:0003677(InterPro)
Hepe10g1689 307 SUPERFAMILY Homeodomain-like 92 148 IPR009057 -
Hepe10g1689 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 147 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1689 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1387 Hepe-Chr8:16299497 Hepe10g1689 Hepe-Chr10:53605750 1.66e-39 dispersed
Hepe09g0329 Hepe-Chr9:2888789 Hepe10g1689 Hepe-Chr10:53605750 5.98e-33 dispersed
Hepe09g0860 Hepe-Chr9:8508285 Hepe10g1689 Hepe-Chr10:53605750 5.89e-37 dispersed
Hepe03g1511 Hepe-Chr3:71991476 Hepe10g1689 Hepe-Chr10:53605750 2.17e-48 transposed
Hepe06g1117 Hepe-Chr6:59886171 Hepe10g1689 Hepe-Chr10:53605750 5.84e-51 transposed
Hepe07g0291 Hepe-Chr7:2963504 Hepe10g1689 Hepe-Chr10:53605750 8.44e-36 transposed
Hepe10g1689 Hepe-Chr10:53605750 Hepe07g2262 Hepe-Chr7:66992533 2.07e-48 wgd
Hepe10g1689 Hepe-Chr10:53605750 Hepe09g0159 Hepe-Chr9:1260536 5.99e-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g806 . . . . . . . . Cmo04g01686 . . . . . Sed04g0666 . Cpe01g01422 Bhi07g01651 Tan04g1157 Cmetu10g0115 Lac13g0251 Hepe10g1689 . . Cla05g02500 Cam05g2684 Cec05g2717 Cco05g2752 Clacu05g2687 Cmu05g2541 Cre05g2656 . . . Cone12ag0614 . Csa05g02385 Chy10g00949 Cme10g00477 . . . . . . . . . . . Cma04g01608 . Car04g01650 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013797 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56541 PF00249 Myb_DNA-binding 2.00E-10 CL0123 Hepe TF