Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1709 ATGAGTCGCAAGAGAGACAAACCCTACCCTTCCCCTCACGTTCACACCTCCGTCGCTAAGAGGCGGCGCCATCCTCCGCTGGTACAGTCGCCGGCGGAGGATGATTATATGGACAAGCCCTTACCGAAGCCCGCGCCACCGCCTGCCCTAGTCGTCGTTGACCTACCTTCACACTGCTCGGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGCGTTGGCTACATCACTTATCGCACCAAAGACTCCGCTGATGCTGCCATGGCCGCCGCCGTCGACCCCTCCTTCGGCTTCACCATTGATTCCAAAAAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTTCATTGGAGACAAGGGATTAACGTTGGTGTTAACAAGAATAAGGAATTGTCATCGAAGCTCTTGCGGGCAGAAGTGCCACTGAGCAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTTAACTCTAGAAAAAGTGACAGTTCTTCAAGGTCGGATGTGCCTTTCAAGGGCAGGGAAGTTGTTGCTTATGATGATATTCTCTAA 585 51.79 MSRKRDKPYPSPHVHTSVAKRRRHPPLVQSPAEDDYMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAAVDPSFGFTIDSKKVQVLWANDPQVHWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSDSSSRSDVPFKGREVVAYDDIL 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 53809385 53810207 - Hsped.10g17090.1 Hepe10g1709 582256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1709 194 Pfam RNA recognition motif 50 101 IPR000504 GO:0003723(InterPro)
Hepe10g1709 194 SUPERFAMILY RNA-binding domain, RBD 29 133 IPR035979 GO:0003676(InterPro)
Hepe10g1709 194 Gene3D - 29 178 IPR012677 -
Hepe10g1709 194 SMART rrm1_1 49 119 IPR000504 GO:0003723(InterPro)
Hepe10g1709 194 MobiDBLite consensus disorder prediction 1 43 - -
Hepe10g1709 194 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 123 IPR000504 GO:0003723(InterPro)
Hepe10g1709 194 CDD RRM_SF 52 94 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1709 - - - 0.0