Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1725 ATGACGAGCAATGGGATGGCCTTTTTTCCAGCAAATTTCATGCTACAAACTCCCCATGAAGATCATGATCATCATCATCACCACTCTTCTCCTCCATCACTCAATCCAATTCTACCTTCTTGCACACCCCAAGATTTTCATGGAGTTGCATCATTTCTAGGAAAACGATCGATGTCGTTTTCGGGGGCGGAAATGGTTGAAGAAGGAAATAACGGTGAGGATGAATTTTCTGATGATGGATCACAGGCAGGTGAGAAAAAGAGGAGACTTAACATGGAGCAAGTGAAAACACTTGAGAAAAATTTCGAACTTGGAAATAAACTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCTCTTGGTTTACAGCCAAGACAGATTGCAATTTGGTTTCAAAACAGAAGGGCAAGATGGAAGACAAAGCAACTAGAAAAAGATTATGATCTTCTCAAGAGACAATTTGAAGCTATCAAATCAGATAATGAAGCTCTCAAATCCCACAACCAAAAACTTCAAGCAGAGATAATGGGACTAAAAAGTAGAGAGCCAACAGAATCAATCAATCTGAACAAAGAAACAGAGGGGTCTTGCAGTAATAGAAGTGAAAACAGCTCTGATAATATCAAATTGGACATCTCAAGAACACCTGCCATCGACAGTCCTCATCGGCATCAACATCAGCATCAACATCAACACCCGCACCCGCACCACCCAACAAATAGGACTCTTTTTCCCACTTCTATAAGGCCTCCAGCTTTGGCTCAACTCTTTCAAACTTCCTCAAGATTATCAGACCCACCAAAGCAACAACTTGAAAACAACAACAATAATCATCAAATTGCTAAAGAAGAAAGCAGCAGCTTGTCCAATATGTTCTGTGGAATGGATGATCACTCTGGATTTTGGCCTTGGTTGGAGCAACAACATTTCAATTGA 936 40.92 MTSNGMAFFPANFMLQTPHEDHDHHHHHSSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSHNQKLQAEIMGLKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHRHQHQHQHQHPHPHHPTNRTLFPTSIRPPALAQLFQTSSRLSDPPKQQLENNNNNHQIAKEESSSLSNMFCGMDDHSGFWPWLEQQHFN 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 54054519 54056366 - Hsped.10g17250.1 Hepe10g1725 582272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1725 311 MobiDBLite consensus disorder prediction 189 211 - -
Hepe10g1725 311 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe10g1725 311 MobiDBLite consensus disorder prediction 17 37 - -
Hepe10g1725 311 FunFam Homeobox-leucine zipper protein ATHB-13 78 145 - -
Hepe10g1725 311 SUPERFAMILY Homeodomain-like 75 143 IPR009057 -
Hepe10g1725 311 Pfam Homeobox associated leucine zipper 141 181 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe10g1725 311 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677(InterPro)
Hepe10g1725 311 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677(InterPro)
Hepe10g1725 311 MobiDBLite consensus disorder prediction 65 86 - -
Hepe10g1725 311 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677(InterPro)
Hepe10g1725 311 CDD homeodomain 86 142 IPR001356 GO:0003677(InterPro)
Hepe10g1725 311 Coils Coil 268 288 - -
Hepe10g1725 311 Coils Coil 133 181 - -
Hepe10g1725 311 SMART HOX_1 84 145 IPR001356 GO:0003677(InterPro)
Hepe10g1725 311 MobiDBLite consensus disorder prediction 177 246 - -
Hepe10g1725 311 Gene3D - 78 147 - -
Hepe10g1725 311 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 64 292 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Hepe10g1725 311 Pfam Homeodomain 86 139 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1562 Hepe-Chr8:21655560 Hepe10g1725 Hepe-Chr10:54054519 2.79e-27 dispersed
Hepe10g0592 Hepe-Chr10:7212512 Hepe10g1725 Hepe-Chr10:54054519 1.76e-23 dispersed
Hepe10g1711 Hepe-Chr10:53819977 Hepe10g1725 Hepe-Chr10:54054519 7.02e-20 dispersed
Hepe10g1725 Hepe-Chr10:54054519 Hepe02g3157 Hepe-Chr2:80975005 5.50e-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56544 PF00046 Homeodomain 3.20E-15 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1725 K09338 - csv:101221595 525.398