Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1732 ATGGATGGTGAAAATGGGATCCGAAGACCTAATTTCCCATTACAATTGTTGGAGAAAAAAGAAGAACAACACCACCAGCAGCACCAACAGCCATGTTCCACCTCCGCAAACAACGGAACAACAACATCAACAAATCCAACAACAACAATTGCAAATCCAAATCCAAATCCAAATCTTCAATCTTCTTCCCCCAAGAAGCCAACACCCAAAAGGGCAACCACCAAAGACCGTCACACCAAAGTCGATGGCCGTGGCCGTCGGATTCGGATGCCGGCCCTTTGCGCTGCTAGGGTTTTTCAGCTCACTAGAGAGCTCGGCCACAAGTCCGACGGCGAAACCATCGAGTGGCTCCTCCAACAGGCCGAGCCTTCCGTCATCGCCGCCACTGGCACTGGTACCATTCCAGCTAATTTCACTTCACTTAATATTTCCCTCCGTAGCTCCGGCTCCACCATCTCCGCTCCTTCCCACCTCCGGACCAGCTATTTCAGTCCCACCCAATTCGCCGTCCGGACAAGATCCGATCTTTGGGACAGAAATAATAGTAATAATCTCGTTGATGATTCCTCCACATTCTTGAATTTCAACTCTCCTAATTACGTCAACGTGTTCAAACACGATCAGAGTGGAATTGACGTCACGGACGCCGCGAAAAAACGGCGTCCGGAGCAGTCGGAATCGTCATCGGAGAATCCGATCGGGAATTATTTGGTTCAATCAAGTACCGGGTCGATTCCGGCGAGTCACAGCACTCCAGTGCCGGCGACATTTTGGATGGTGACGAATCCAACCAATCAAGCGAGTGATCCGATGTGGACATTTCCATCGGCGAGCAACGCCAGCATGTTCAGAGGGGCGCCAGTGGCCGCCACCGCTGGCTCTGGCGGCGGCGGTTTTCATTTCATGAATCTTCCACCCCCAATGGCTCTTTTGCCAACAGCCCAACAGTTGAGTTCCGGGATCGGAGGAGGTCCGGCGACCGACACCCACTTGGGGATGTTGGCGGCTCTAAGTGCTTATAGAACGATGCCGGGATTGTCAGTTTCAGAATCTCCAACAAGAGGAGTGGCGGCTGTTCATCAAGGTGGAAATGAAGCTCATGATTCCACTTCTAATCGTGATCAATCTTAG 1131 51.64 MDGENGIRRPNFPLQLLEKKEEQHHQQHQQPCSTSANNGTTTSTNPTTTIANPNPNPNLQSSSPKKPTPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRNNSNNLVDDSSTFLNFNSPNYVNVFKHDQSGIDVTDAAKKRRPEQSESSSENPIGNYLVQSSTGSIPASHSTPVPATFWMVTNPTNQASDPMWTFPSASNASMFRGAPVAATAGSGGGGFHFMNLPPPMALLPTAQQLSSGIGGGPATDTHLGMLAALSAYRTMPGLSVSESPTRGVAAVHQGGNEAHDSTSNRDQS 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 54154477 54156877 - Hsped.10g17320.1 Hepe10g1732 582279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1732 376 MobiDBLite consensus disorder prediction 1 85 - -
Hepe10g1732 376 MobiDBLite consensus disorder prediction 351 376 - -
Hepe10g1732 376 MobiDBLite consensus disorder prediction 28 68 - -
Hepe10g1732 376 MobiDBLite consensus disorder prediction 215 248 - -
Hepe10g1732 376 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 41 347 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Hepe10g1732 376 MobiDBLite consensus disorder prediction 227 248 - -
Hepe10g1732 376 ProSiteProfiles TCP domain profile. 74 128 IPR017887 -
Hepe10g1732 376 Pfam TCP family transcription factor 73 184 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1732 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0906 Hepe-Chr1:73300444 Hepe10g1732 Hepe-Chr10:54154477 4.14e-33 dispersed
Hepe08g0907 Hepe-Chr8:8320332 Hepe10g1732 Hepe-Chr10:54154477 1.30e-24 dispersed
Hepe10g1486 Hepe-Chr10:51695896 Hepe10g1732 Hepe-Chr10:54154477 2.03e-41 transposed
Hepe10g1732 Hepe-Chr10:54154477 Hepe07g2519 Hepe-Chr7:69524841 3.12e-55 wgd
Hepe10g1732 Hepe-Chr10:54154477 Hepe09g0125 Hepe-Chr9:998999 2.76e-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g894 . Blo16g01121 . Bda11g01222 Bpe13g01416 . . Bma15g00272 Cmo04g01729 Cmo18g01183 . Cma18g01160 . Car18g01068 Sed06g1538 . Cpe01g01458 Bhi07g01576 Tan04g1091 Cmetu10g1669 Lac13g0309 Hepe10g1732 . . Cla05g02451 Cam05g2637 Cec05g2670 Cco05g2708 Clacu05g2640 Cmu05g2494 Cre05g2607 . Cone19ag0952 . . Lsi04g00434 Csa05g02440 Chy10g00992 Cme10g00425 . . . Bda11g01222 . . . Bma06g00680 . . . . . Car04g01690 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56546 PF03634 TCP 1.80E-37 No_clan Hepe TF