Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1740 ATGTGCAGCATAAAATCAGATCAGCCAATAACCCCTCATTTCAATTACACTTCAATTCCAAAATCCATGGTTATTTCCTACGGAGAATGTCTCAAGAATCACGCCGCCACCGTCGGCGGCCACGCTCTCGACGGCTGCGGCGAGTTTATGCCGTCGCTTACCGCCACACCCACCGATCCCACCTCTCTAAATTGCGCCGCCTGTGGTTGCCACCGTAACTTCCACCGCCGTGAACCGGACGATCCCTGGCACCGCCGTTACCACCCAAACAAGACCCAAAGCCCATCGTCGCCGATTCCTGTACCAATCTCGCACATCCCACCGGCAGTCCATTTCTCCGGGCCCCACATGTTGCTGGCATTGAGGAGCGGAGCGGCGGCGGACGACCACCGTGGCGGGCAATTGAGCAGGAAAGAGAGGAAGAGAAAGAGGACAAAATTCAGCGGGGAGCAGAAGGAGAAGATGCAAATGTTCTCGGAAAAAATGGGATGGAGAATTGGGAAAAGTGAGGAGAGATTAGTGGAGGAATTCTGCAATGAAATTGGGATTGGGAAGCGGGTGTTGAGAGTTTGGATGCATAATAACAAATACATGGGAGGAAAAACAGCAGAGAAAAACAGAGCTTCTCAGAGTAGTGAAAATGGTGGAAATTATGACTCAAAACAGAGTACATAG 675 51.26 MCSIKSDQPITPHFNYTSIPKSMVISYGECLKNHAATVGGHALDGCGEFMPSLTATPTDPTSLNCAACGCHRNFHRREPDDPWHRRYHPNKTQSPSSPIPVPISHIPPAVHFSGPHMLLALRSGAAADDHRGGQLSRKERKRKRTKFSGEQKEKMQMFSEKMGWRIGKSEERLVEEFCNEIGIGKRVLRVWMHNNKYMGGKTAEKNRASQSSENGGNYDSKQST 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 54226269 54227522 - Hsped.10g17400.1 Hepe10g1740 582287

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1740 224 NCBIfam homeobox domain, ZF-HD class 140 197 IPR006455 -
Hepe10g1740 224 MobiDBLite consensus disorder prediction 125 152 - -
Hepe10g1740 224 MobiDBLite consensus disorder prediction 79 100 - -
Hepe10g1740 224 ProSiteProfiles 'Homeobox' domain profile. 138 202 IPR001356 GO:0003677(InterPro)
Hepe10g1740 224 Gene3D - 124 200 - -
Hepe10g1740 224 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 27 78 IPR006456 -
Hepe10g1740 224 MobiDBLite consensus disorder prediction 204 224 - -
Hepe10g1740 224 SUPERFAMILY Homeodomain-like 128 197 IPR009057 -
Hepe10g1740 224 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 22 196 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Hepe10g1740 224 MobiDBLite consensus disorder prediction 200 224 - -
Hepe10g1740 224 Pfam ZF-HD protein dimerisation region 25 79 IPR006456 -
Hepe10g1740 224 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 27 78 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1740 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3167 Hepe-Chr2:81170491 Hepe10g1740 Hepe-Chr10:54226269 6.30e-56 dispersed
Hepe10g0633 Hepe-Chr10:7943709 Hepe10g1740 Hepe-Chr10:54226269 6.72e-35 dispersed
Hepe10g1740 Hepe-Chr10:54226269 Hepe02g3166 Hepe-Chr2:81147527 1.16e-17 wgd
Hepe10g1740 Hepe-Chr10:54226269 Hepe07g2509 Hepe-Chr7:69424108 4.98e-17 wgd
Hepe10g1740 Hepe-Chr10:54226269 Hepe09g0122 Hepe-Chr9:956621 1.31e-19 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe07g0601 . 58 213 ZF-HD Transcription Factor Family AT4G24660 54.7 1.3e-47 186.8
Hepe07g1387 . 83 292 ZF-HD Transcription Factor Family AT2G02540 53.2 1.8e-52 203.4
Hepe07g1387 . 80 295 ZF-HD Transcription Factor Family AT1G14440 53.0 3.4e-54 209.1
Hepe02g1975 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g2004 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g3167 . 14 274 ZF-HD Transcription Factor Family AT5G15210 51.3 1.1e-48 190.7
Hepe02g1975 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g2004 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g3167 . 25 276 ZF-HD Transcription Factor Family AT3G28920 59.1 3.6e-56 215.7
Hepe02g1975 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g2004 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g3167 . 33 288 ZF-HD Transcription Factor Family AT5G39760 56.0 2.0e-49 193.4
Hepe10g1740 . 18 204 ZF-HD Transcription Factor Family AT1G69600 50.5 4.0e-47 185.3
Hepe07g1387 . 83 292 ZF-HD Transcription Factor Family AT2G02540 53.2 1.8e-52 203.4
Hepe07g0601 . 58 213 ZF-HD Transcription Factor Family AT4G24660 54.7 1.3e-47 186.8
Hepe02g1975 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g2004 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g3167 . 33 288 ZF-HD Transcription Factor Family AT5G39760 56.0 2.0e-49 193.4
Hepe10g1740 . 18 204 ZF-HD Transcription Factor Family AT1G69600 50.5 4.0e-47 185.3
Hepe02g1975 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g2004 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g3167 . 14 274 ZF-HD Transcription Factor Family AT5G15210 51.3 1.1e-48 190.7
Hepe07g1387 . 80 295 ZF-HD Transcription Factor Family AT1G14440 53.0 3.4e-54 209.1
Hepe02g1975 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g2004 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g3167 . 25 276 ZF-HD Transcription Factor Family AT3G28920 59.1 3.6e-56 215.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013584 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56548 PF04770 ZF-HD_dimer 3.80E-28 No_clan Hepe TF