Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1740 ATGTGCAGCATAAAATCAGATCAGCCAATAACCCCTCATTTCAATTACACTTCAATTCCAAAATCCATGGTTATTTCCTACGGAGAATGTCTCAAGAATCACGCCGCCACCGTCGGCGGCCACGCTCTCGACGGCTGCGGCGAGTTTATGCCGTCGCTTACCGCCACACCCACCGATCCCACCTCTCTAAATTGCGCCGCCTGTGGTTGCCACCGTAACTTCCACCGCCGTGAACCGGACGATCCCTGGCACCGCCGTTACCACCCAAACAAGACCCAAAGCCCATCGTCGCCGATTCCTGTACCAATCTCGCACATCCCACCGGCAGTCCATTTCTCCGGGCCCCACATGTTGCTGGCATTGAGGAGCGGAGCGGCGGCGGACGACCACCGTGGCGGGCAATTGAGCAGGAAAGAGAGGAAGAGAAAGAGGACAAAATTCAGCGGGGAGCAGAAGGAGAAGATGCAAATGTTCTCGGAAAAAATGGGATGGAGAATTGGGAAAAGTGAGGAGAGATTAGTGGAGGAATTCTGCAATGAAATTGGGATTGGGAAGCGGGTGTTGAGAGTTTGGATGCATAATAACAAATACATGGGAGGAAAAACAGCAGAGAAAAACAGAGCTTCTCAGAGTAGTGAAAATGGTGGAAATTATGACTCAAAACAGAGTACATAG 675 51.26 MCSIKSDQPITPHFNYTSIPKSMVISYGECLKNHAATVGGHALDGCGEFMPSLTATPTDPTSLNCAACGCHRNFHRREPDDPWHRRYHPNKTQSPSSPIPVPISHIPPAVHFSGPHMLLALRSGAAADDHRGGQLSRKERKRKRTKFSGEQKEKMQMFSEKMGWRIGKSEERLVEEFCNEIGIGKRVLRVWMHNNKYMGGKTAEKNRASQSSENGGNYDSKQST 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 54226269 54227522 - Hsped.10g17400.1 Hepe10g1740 582287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1740 224 NCBIfam homeobox domain, ZF-HD class 140 197 IPR006455 -
Hepe10g1740 224 MobiDBLite consensus disorder prediction 125 152 - -
Hepe10g1740 224 MobiDBLite consensus disorder prediction 79 100 - -
Hepe10g1740 224 ProSiteProfiles 'Homeobox' domain profile. 138 202 IPR001356 GO:0003677(InterPro)
Hepe10g1740 224 Gene3D - 124 200 - -
Hepe10g1740 224 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 27 78 IPR006456 -
Hepe10g1740 224 MobiDBLite consensus disorder prediction 204 224 - -
Hepe10g1740 224 SUPERFAMILY Homeodomain-like 128 197 IPR009057 -
Hepe10g1740 224 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 22 196 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Hepe10g1740 224 MobiDBLite consensus disorder prediction 200 224 - -
Hepe10g1740 224 Pfam ZF-HD protein dimerisation region 25 79 IPR006456 -
Hepe10g1740 224 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 27 78 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3167 Hepe-Chr2:81170491 Hepe10g1740 Hepe-Chr10:54226269 6.30e-56 dispersed
Hepe10g0633 Hepe-Chr10:7943709 Hepe10g1740 Hepe-Chr10:54226269 6.72e-35 dispersed
Hepe10g1740 Hepe-Chr10:54226269 Hepe02g3166 Hepe-Chr2:81147527 1.16e-17 wgd
Hepe10g1740 Hepe-Chr10:54226269 Hepe07g2509 Hepe-Chr7:69424108 4.98e-17 wgd
Hepe10g1740 Hepe-Chr10:54226269 Hepe09g0122 Hepe-Chr9:956621 1.31e-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56548 PF04770 ZF-HD_dimer 3.80E-28 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1740 - - - 0.0