Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1754 ATGGGAAGAGTAAAGCTCAAGATCAAGAGGTTGGATAATACTAACGGACGCCAAGCAACTTTCGCCAAAAGAAAGCACGGAATCATGAAGAAAGCTAATGAGTTATCGATCTTGTGTGACATTGATATTGTTCTTCTCATGTTTTCTCCCACTGGAAAACCCTCTCTCTGCTCTGGAAAACGCAGTATTGAAGAGGTAATCGCCAAGTTTGCTCAACAAACTCCACAGGAAAGAGCAAAAAGGAAAATGGAAAGCCTTGAAGCACTGCGGAAAACTTTCAAGAAATTGGACCACGATGTCAACATACAAGATTTCCTAGGGACAAGTAGCCAAACGATTGAGGATTTGGCTGGCCAAGCAAAGCTATTACGGACCCAACTTTCTGAAGTACATCAGAGATTAAGCTATTGGGGTAATCCTGATAAGATAAACAACGTGGATCATTTGACCCAAATGGAGGATTCGTTGAGAGAATCACTTAATCAAGTTCGAGCGCACAAGGAAAATCTGCAGAAGCATCCTCCAGTACCATTAGAGTTCACTAATCAGATGCAGGATGGAATGCATATACCTTTCGATATGAGTGTTGAGCAACAGCTTCAACAACTCCAACATTTCTCTTGGATTCCCAGTGATAGTCAAAACATAGTTTTACACGACGATCCACACTTCGTTCCCCATAGAGATGTGGAGTGCTCTGCAAGTTCGTCCTTTGCTAGTTACCCTGGTTATTTTGGCACGGGTAGAAGTCCGGAGATTTCTAATTCTGGACAAGAAAATGGCGTCCTCCCTGAACTATGCAAAACAGAACCTCTAAGGCCCCAGCTAGGAGGGCAAAATTCCTACATGTCTTATAATGTCAACTTTTTTAATGACCCAAGATTTCAGCCAGCAGCAGAGATGAACGTGCCAGTAAATCCTGTAGATTATCATGTTAATGGAAACTACGACCCCACCCAACACAATTGGGCTCCTTCTTCTGGCCCTTGTGCTGTTTCATTGTTAGACGATCGCTTATTTCCATAA 1026 42.69 MGRVKLKIKRLDNTNGRQATFAKRKHGIMKKANELSILCDIDIVLLMFSPTGKPSLCSGKRSIEEVIAKFAQQTPQERAKRKMESLEALRKTFKKLDHDVNIQDFLGTSSQTIEDLAGQAKLLRTQLSEVHQRLSYWGNPDKINNVDHLTQMEDSLRESLNQVRAHKENLQKHPPVPLEFTNQMQDGMHIPFDMSVEQQLQQLQHFSWIPSDSQNIVLHDDPHFVPHRDVECSASSSFASYPGYFGTGRSPEISNSGQENGVLPELCKTEPLRPQLGGQNSYMSYNVNFFNDPRFQPAAEMNVPVNPVDYHVNGNYDPTQHNWAPSSGPCAVSLLDDRLFP 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 54333540 54337578 + Hsped.10g17540.1 Hepe10g1754 582301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1754 341 Coils Coil 76 96 - -
Hepe10g1754 341 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 204 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe10g1754 341 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g1754 341 Gene3D - 13 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g1754 341 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g1754 341 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g1754 341 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g1754 341 Coils Coil 149 169 - -
Hepe10g1754 341 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g1754 341 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Hepe10g1754 341 FunFam Agamous-like MADS-box protein AGL30 14 95 - -
Hepe10g1754 341 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g1754 341 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe09g1310 Hepe-Chr9:19079909 Hepe10g1754 Hepe-Chr10:54333540 9.72e-08 dispersed
Hepe10g1754 Hepe-Chr10:54333540 Hepe02g0961 Hepe-Chr2:11635743 7.11e-06 dispersed
Hepe07g0652 Hepe-Chr7:7466567 Hepe10g1754 Hepe-Chr10:54333540 9.15e-27 transposed
Hepe10g1754 Hepe-Chr10:54333540 Hepe07g2502 Hepe-Chr7:69351187 2.10e-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56552 PF00319 SRF-TF 1.30E-18 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1754 - - - 0.0