Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1754 ATGGGAAGAGTAAAGCTCAAGATCAAGAGGTTGGATAATACTAACGGACGCCAAGCAACTTTCGCCAAAAGAAAGCACGGAATCATGAAGAAAGCTAATGAGTTATCGATCTTGTGTGACATTGATATTGTTCTTCTCATGTTTTCTCCCACTGGAAAACCCTCTCTCTGCTCTGGAAAACGCAGTATTGAAGAGGTAATCGCCAAGTTTGCTCAACAAACTCCACAGGAAAGAGCAAAAAGGAAAATGGAAAGCCTTGAAGCACTGCGGAAAACTTTCAAGAAATTGGACCACGATGTCAACATACAAGATTTCCTAGGGACAAGTAGCCAAACGATTGAGGATTTGGCTGGCCAAGCAAAGCTATTACGGACCCAACTTTCTGAAGTACATCAGAGATTAAGCTATTGGGGTAATCCTGATAAGATAAACAACGTGGATCATTTGACCCAAATGGAGGATTCGTTGAGAGAATCACTTAATCAAGTTCGAGCGCACAAGGAAAATCTGCAGAAGCATCCTCCAGTACCATTAGAGTTCACTAATCAGATGCAGGATGGAATGCATATACCTTTCGATATGAGTGTTGAGCAACAGCTTCAACAACTCCAACATTTCTCTTGGATTCCCAGTGATAGTCAAAACATAGTTTTACACGACGATCCACACTTCGTTCCCCATAGAGATGTGGAGTGCTCTGCAAGTTCGTCCTTTGCTAGTTACCCTGGTTATTTTGGCACGGGTAGAAGTCCGGAGATTTCTAATTCTGGACAAGAAAATGGCGTCCTCCCTGAACTATGCAAAACAGAACCTCTAAGGCCCCAGCTAGGAGGGCAAAATTCCTACATGTCTTATAATGTCAACTTTTTTAATGACCCAAGATTTCAGCCAGCAGCAGAGATGAACGTGCCAGTAAATCCTGTAGATTATCATGTTAATGGAAACTACGACCCCACCCAACACAATTGGGCTCCTTCTTCTGGCCCTTGTGCTGTTTCATTGTTAGACGATCGCTTATTTCCATAA 1026 42.69 MGRVKLKIKRLDNTNGRQATFAKRKHGIMKKANELSILCDIDIVLLMFSPTGKPSLCSGKRSIEEVIAKFAQQTPQERAKRKMESLEALRKTFKKLDHDVNIQDFLGTSSQTIEDLAGQAKLLRTQLSEVHQRLSYWGNPDKINNVDHLTQMEDSLRESLNQVRAHKENLQKHPPVPLEFTNQMQDGMHIPFDMSVEQQLQQLQHFSWIPSDSQNIVLHDDPHFVPHRDVECSASSSFASYPGYFGTGRSPEISNSGQENGVLPELCKTEPLRPQLGGQNSYMSYNVNFFNDPRFQPAAEMNVPVNPVDYHVNGNYDPTQHNWAPSSGPCAVSLLDDRLFP 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 54333540 54337578 + Hsped.10g17540.1 Hepe10g1754 582301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1754 341 Coils Coil 76 96 - -
Hepe10g1754 341 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 204 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe10g1754 341 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g1754 341 Gene3D - 13 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g1754 341 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g1754 341 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g1754 341 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g1754 341 Coils Coil 149 169 - -
Hepe10g1754 341 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g1754 341 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Hepe10g1754 341 FunFam Agamous-like MADS-box protein AGL30 14 95 - -
Hepe10g1754 341 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe10g1754 341 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1754 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe09g1310 Hepe-Chr9:19079909 Hepe10g1754 Hepe-Chr10:54333540 9.72e-08 dispersed
Hepe10g1754 Hepe-Chr10:54333540 Hepe02g0961 Hepe-Chr2:11635743 7.11e-06 dispersed
Hepe07g0652 Hepe-Chr7:7466567 Hepe10g1754 Hepe-Chr10:54333540 9.15e-27 transposed
Hepe10g1754 Hepe-Chr10:54333540 Hepe07g2502 Hepe-Chr7:69351187 2.10e-109 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe10g1754 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 6.9e-94 341.3
Hepe07g2502 . 1 257 Type I MADS-box Gene Family AT2G03060 53.2 1.5e-67 253.8
Hepe07g0389 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 6.4e-38 154.8
Hepe07g0389 . 1 176 Type I MADS-box Gene Family AT5G60440 59.2 1.3e-50 197.2
Hepe07g0652 . 1 174 Type I MADS-box Gene Family AT1G77950 59.9 3.9e-53 205.3
Hepe09g1768 . 1 156 Type I MADS-box Gene Family AT5G48670 64.7 3.6e-51 199.1
Hepe07g1493 . 1 157 Type I MADS-box Gene Family AT5G48670 59.2 4.4e-49 192.2
Hepe10g1754 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 6.9e-94 341.3
Hepe07g2502 . 1 257 Type I MADS-box Gene Family AT2G03060 53.2 1.5e-67 253.8
Hepe07g0389 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 6.4e-38 154.8
Hepe07g0389 . 1 176 Type I MADS-box Gene Family AT5G60440 59.2 1.3e-50 197.2
Hepe07g0652 . 1 174 Type I MADS-box Gene Family AT1G77950 59.9 3.9e-53 205.3
Hepe09g1768 . 1 156 Type I MADS-box Gene Family AT5G48670 64.7 3.6e-51 199.1
Hepe07g1493 . 1 157 Type I MADS-box Gene Family AT5G48670 59.2 4.4e-49 192.2
Hepe10g1754 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 6.9e-94 341.3
Hepe07g2502 . 1 257 Type I MADS-box Gene Family AT2G03060 53.2 1.5e-67 253.8
Hepe07g0389 . 1 176 Type I MADS-box Gene Family AT5G60440 59.2 1.3e-50 197.2
Hepe09g1768 . 1 156 Type I MADS-box Gene Family AT5G48670 64.7 3.6e-51 199.1
Hepe07g1493 . 1 157 Type I MADS-box Gene Family AT5G48670 59.2 4.4e-49 192.2
Hepe07g0389 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 6.4e-38 154.8
Hepe07g0652 . 1 174 Type I MADS-box Gene Family AT1G77950 59.9 3.9e-53 205.3
Hepe10g1754 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 6.9e-94 341.3
Hepe07g2502 . 1 257 Type I MADS-box Gene Family AT2G03060 53.2 1.5e-67 253.8
Hepe07g0389 . 1 176 Type I MADS-box Gene Family AT5G60440 59.2 1.3e-50 197.2
Hepe09g1768 . 1 156 Type I MADS-box Gene Family AT5G48670 64.7 3.6e-51 199.1
Hepe07g1493 . 1 157 Type I MADS-box Gene Family AT5G48670 59.2 4.4e-49 192.2
Hepe07g0389 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 6.4e-38 154.8
Hepe07g0652 . 1 174 Type I MADS-box Gene Family AT1G77950 59.9 3.9e-53 205.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006439 2 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56552 PF00319 SRF-TF 1.30E-18 No_clan Hepe TF