Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1755 ATGGCTTCTGCTTCTGTCCTCTTCTTTTTGGCAGGCTTCTATGCTGTAGTTTTCTCTGTTGATGCCTATGCAGGTGGAGGCTGGACTAACGCTCATGCCACTTTCTATGGTGGGAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGGAACTTATATAGCCAAGGCTATGGAACAAACACTGCTGCTCTGAGTACGGCTCTGTTCAACAATGGGTTGAGCTGTGGTTCCTGCTATGAAATTAGATGTGCAAGTGACCCTAGATGGTGTCTGCCAGGCTCCATTGTGGTCACTGCTACCAATTTCTGCCCTCCAAACAGTGCCCTCCCCAACAACGCTGGAGGCTGGTGCAACCCTCCATTGCAGCACTTTGATCTCTCTCAACCTGTCTTCCAACACATTGCTCAGTACAGAGCAGGAATTGTGCCTGTCGCCTTCAGAAGGGTACCCTGCAGGAGAAGGGGAGGCATAAGGTTTACCATTAATGGTCACTCCTACTTCAACCTGGTGTTGATCACAAACGTGGGTGGTGCTGGTGATGTACATGCAGTTTCCATCAAAGGATCAAGAACTGGATGGCAAGCAATGTCAAGGAATTGGGGACAGAACTGGCAGAGCAACAGCTACCTCAATGGCCAAAGCCTGTCCTTTAAGGTCACCACCAGCGACGGCCGAACAGTCATTTCCAACAATGCTGTCCCAGCCGGCTGGTCCTTTGGACAGACTTACAATGGTGCCCAATTCTGA 753 50.6 MASASVLFFLAGFYAVVFSVDAYAGGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCASDPRWCLPGSIVVTATNFCPPNSALPNNAGGWCNPPLQHFDLSQPVFQHIAQYRAGIVPVAFRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVISNNAVPAGWSFGQTYNGAQF 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 54338219 54339832 - Hsped.10g17550.1 Hepe10g1755 582302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1755 250 Gene3D - 158 250 IPR036749 -
Hepe10g1755 250 PRINTS Expansin signature 169 190 IPR002963 GO:0009664(InterPro)
Hepe10g1755 250 PRINTS Expansin signature 116 133 IPR002963 GO:0009664(InterPro)
Hepe10g1755 250 PRINTS Expansin signature 85 96 IPR002963 GO:0009664(InterPro)
Hepe10g1755 250 PRINTS Expansin signature 204 225 IPR002963 GO:0009664(InterPro)
Hepe10g1755 250 PRINTS Expansin signature 157 169 IPR002963 GO:0009664(InterPro)
Hepe10g1755 250 PRINTS Expansin signature 97 107 IPR002963 GO:0009664(InterPro)
Hepe10g1755 250 PRINTS Expansin signature 58 72 IPR002963 GO:0009664(InterPro)
Hepe10g1755 250 PRINTS Expansin signature 233 249 IPR002963 GO:0009664(InterPro)
Hepe10g1755 250 PRINTS Expansin signature 133 146 IPR002963 GO:0009664(InterPro)
Hepe10g1755 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 158 IPR007112 -
Hepe10g1755 250 Pfam Expansin C-terminal domain 159 236 IPR007117 -
Hepe10g1755 250 FunFam Expansin 158 250 - -
Hepe10g1755 250 FunFam Expansin 17 154 - -
Hepe10g1755 250 Gene3D - 15 154 IPR036908 -
Hepe10g1755 250 SMART dpbb_1 63 148 IPR007112 -
Hepe10g1755 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Hepe10g1755 250 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576(InterPro)
Hepe10g1755 250 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576(InterPro)
Hepe10g1755 250 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576(InterPro)
Hepe10g1755 250 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576(InterPro)
Hepe10g1755 250 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576(InterPro)
Hepe10g1755 250 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576(InterPro)
Hepe10g1755 250 CDD DPBB_EXPA_N 27 153 - -
Hepe10g1755 250 PANTHER EXPANSIN-A15 7 250 IPR002963 GO:0009664(InterPro)
Hepe10g1755 250 SUPERFAMILY Barwin-like endoglucanases 27 176 IPR036908 -
Hepe10g1755 250 Pfam Lytic transglycolase 63 147 IPR009009 -
Hepe10g1755 250 SUPERFAMILY PHL pollen allergen 155 246 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0880 Hepe-Chr2:10517200 Hepe10g1755 Hepe-Chr10:54338219 3.18e-52 dispersed
Hepe02g2415 Hepe-Chr2:69998780 Hepe10g1755 Hepe-Chr10:54338219 4.32e-89 dispersed
Hepe10g1240 Hepe-Chr10:47669621 Hepe10g1755 Hepe-Chr10:54338219 3.73e-129 dispersed
Hepe02g3279 Hepe-Chr2:82407301 Hepe10g1755 Hepe-Chr10:54338219 1.66e-141 transposed
Hepe10g0175 Hepe-Chr10:1772782 Hepe10g1755 Hepe-Chr10:54338219 3.95e-119 transposed
Hepe10g1755 Hepe-Chr10:54338219 Hepe09g0111 Hepe-Chr9:892173 1.35e-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1755 - - - 0.0