Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1767 ATGAAGTTTGGGAAGCAATTTACTGCTCAGATGGTCCCAGAATGGCAACAAGCCTACATGGATTACGATTTTCTGAAATCGCTTTTGAAGCAAATTGAATCCTTCAACAAAACCCACGCTAGAAATCACCCCCCAACCCACTCCGGCCAGCTCCGACGGACTCTCACCCTTTACCGAGCTTTCAGCGGCCTTACGCTCCGCCACAGCCATAGCCACGGCCATAGCCATGGCCTCAACACCCACCCTGCTACTCCAGATTCGCCGCAGGATGTGACGACGGAGGAACATGCGATACTAGTGAACGCGGTGAATCGGGACGGGACGAAGAAGTACAAGACGACGTTTTTGATGGCGGACGAGGAAGGAGGGGAGTACGAGCTGGTGTACTTCAGGTCATTGGATAGAGAGTTCAATAAAGTGGACAAGTTTTACAAGTCTAAAGTAGAGGAGGTTGTGAAGGAAGCGAGTGTGTTGAATAAGCAAATGGATGCTTTGATTGCTTTTAGAATCAAAGTGGAGAATCCAAAGGGCGTTTGGGATTATTCCGGCGATCGCTCGTCGGAGGAGATTACAAAATTGGCCACTGATATTGCTGTTTCAACGGCTGCTTTGTCATCTTCAACTCCTTCTGGAGTCAGAGCTAGCAGAAGGGTTCATATAGCGATGGACGCCATAGAAGAAGGTGAAGGTGGGTCGAGCCACAATGGCGATAGTCATAAACCAAATAAAATTGAATCAAAAGACGAGGATAAAAATGAAAAAGGAGATCATGAGTACAACAAATCAAAGGCGGGCGAATTAGAAGAGAAATCAACAACAAAGATGAAAACAAACAGGCCACCTCCAATTGAACTTCTTGATCGAGTAACAATGAACACAACTCTAGAGACGCCAAGATCCACCATTAAAGGACTTCTCAATTACCCTAAAAATTCAGAGCTTCAATTCAACAAAGAAAACCTCAACAAAATTGAGAACCAACTCAAAAAGGCTTTTGTTATTACTTCAAGAAATGCAGGAAAGTCATACATGAAGATGGTGGACAGCTCTTACCTTGGGAGTTCTGATGAGGTTTCCAAGTTAATGGAGAGGGTGGAAGCAACATTTATCAAACACTTCTGCAATGCTAATCGCACCAAAGGAATGAACATCTTGAGACCTAAAGCAAAGAGAGAAAGACATAGAACTACATTTTCAGTTGGTTTCTTTGCTGGCTGCACCATAGCTCTTGTCGTCGCCCTCATTTTTATTACACGAGCCCGTCATCTAATAGACAGAGAAGGCAGCACGCAGTATATGGAAACTATGTTTCCGCTTTACAGCTTGTTTGGATTTGTTGTCTTGCACCTGCTAATGTATGCAGCAAACATATACTTTTGGAGGAAATACCAAGTGAATTATTCCTTCATATTTGGTTTCAAGCCAGGCACTGAATTGGCCTACCGTGAGGTTCTGCTTCCCAGTTTTGCTATGGCAACTCTTGCTTTAGCCTTTGTTCTTTCTAACCTTGACATGGAGATGGACCCTGTAACGAAGTCGTATCAAGCAATCACTGAACTTCTCCCCTTAGTTTTGCTCCTCCTTGTGATTGCAATCTTCTTATGTCCATTCAACATCTTATATCGCTCGAGTCGCTTCTTCTTCATAAGAACTATATACCACTGCCTATGTGCTCCCCTCTATACGGTCATCTTCCCTGATTTCTTCTTGGCAGATCAGATAACCAGTCAGGTGCAAGCACTTCGTAGCCTGGAATTCTACATTTGCTATTACGGTTGGGGAGATTACAAACATCGACGAAACACGTGTAGAACGAACACGATATTCAACACTTTCAGTTTCATCATTGCTGTTATTCCTTATTTGTCACGTCTCCTTCAGTGTCTCAGGCGACTGTTTGAGGAGAAAGATGCAATGCAGGGATATAATGGAGTGAAGTACTTCTTGACAATCGTAGCTGTTTGCTTGAGAACAGCTTACAGTCTGAACAAGGGAGTAACCTGGAAAGTGCTAGCCGCGGTTTTCTCGGCTGTCGCTGCCATCATATGCACATATTGGGACATTGCCATCGACTGGGGCCTCCTGCAACGACGTTCAAAGAACCGCTGGTTGAGAGACAAGCTGCTTGTTGGTCGCAACAGTGTATACTATGTGGCAATGGTCTTGAATGTTTTGCTGAGGTTTGCTTGGCTGCAAACTGTGTTGGATTTCCAATTTTCATTCCTGCATACACAAGGTTTGACTACAGTAGTTGCCAGCCTCGAGATCATTCGTCGTGGCATATGGAATTTCTTCAGGTTGGAGAATGAGCATCTGAACAATGTTGGGAAGTACCGTGCGTTTAAATCTGTACCACTACCTTTCAACTATGATGAAGATGATGACAAAGATGATTAA 2397 44.1 MKFGKQFTAQMVPEWQQAYMDYDFLKSLLKQIESFNKTHARNHPPTHSGQLRRTLTLYRAFSGLTLRHSHSHGHSHGLNTHPATPDSPQDVTTEEHAILVNAVNRDGTKKYKTTFLMADEEGGEYELVYFRSLDREFNKVDKFYKSKVEEVVKEASVLNKQMDALIAFRIKVENPKGVWDYSGDRSSEEITKLATDIAVSTAALSSSTPSGVRASRRVHIAMDAIEEGEGGSSHNGDSHKPNKIESKDEDKNEKGDHEYNKSKAGELEEKSTTKMKTNRPPPIELLDRVTMNTTLETPRSTIKGLLNYPKNSELQFNKENLNKIENQLKKAFVITSRNAGKSYMKMVDSSYLGSSDEVSKLMERVEATFIKHFCNANRTKGMNILRPKAKRERHRTTFSVGFFAGCTIALVVALIFITRARHLIDREGSTQYMETMFPLYSLFGFVVLHLLMYAANIYFWRKYQVNYSFIFGFKPGTELAYREVLLPSFAMATLALAFVLSNLDMEMDPVTKSYQAITELLPLVLLLLVIAIFLCPFNILYRSSRFFFIRTIYHCLCAPLYTVIFPDFFLADQITSQVQALRSLEFYICYYGWGDYKHRRNTCRTNTIFNTFSFIIAVIPYLSRLLQCLRRLFEEKDAMQGYNGVKYFLTIVAVCLRTAYSLNKGVTWKVLAAVFSAVAAIICTYWDIAIDWGLLQRRSKNRWLRDKLLVGRNSVYYVAMVLNVLLRFAWLQTVLDFQFSFLHTQGLTTVVASLEIIRRGIWNFFRLENEHLNNVGKYRAFKSVPLPFNYDEDDDKDD 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 54430577 54437583 - Hsped.10g17670.1 Hepe10g1767 582314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1767 798 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 796 - GO:0000822(PANTHER)|GO:0005737(PANTHER)|GO:0005794(PANTHER)|GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0006817(PANTHER)|GO:0015114(PANTHER)|GO:0016036(PANTHER)
Hepe10g1767 798 Pfam EXS family 436 772 IPR004342 GO:0016020(InterPro)
Hepe10g1767 798 CDD SPX_PHO1_like 2 175 IPR034092 -
Hepe10g1767 798 ProSiteProfiles EXS domain profile. 604 798 IPR004342 GO:0016020(InterPro)
Hepe10g1767 798 ProSiteProfiles SPX domain profile. 1 345 IPR004331 -
Hepe10g1767 798 Pfam SPX domain 1 333 IPR004331 -
Hepe10g1767 798 MobiDBLite consensus disorder prediction 226 281 - -
Hepe10g1767 798 MobiDBLite consensus disorder prediction 76 91 - -
Hepe10g1767 798 MobiDBLite consensus disorder prediction 69 91 - -
Hepe10g1767 798 MobiDBLite consensus disorder prediction 226 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1767 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g1767 Hepe-Chr10:54430577 HepeContig68g0009 Hepe-ChrContig68:511970 0.0 dispersed
Hepe10g1766 Hepe-Chr10:54418350 Hepe10g1767 Hepe-Chr10:54430577 5.22e-219 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g964 . . . . . . . . . Cmo18g01150 . Cma18g01128 . Car18g01042 Sed06g1507 . . Bhi07g01530 Tan04g1051 Cmetu06g0752 Lac13g0343 Hepe10g1767 . . Cla05g02420 Cam05g2601 Cec05g2632 Cco05g2672 Clacu05g2602 Cmu05g2456 Cre05g2572 . . . . Lsi04g00392 . Chy10g01029 Cme10g00389 . . . . . . . . . . . . . . Car15g00256 Cpe13g00964 . . . . . . . . . . . . . . . . . Chy09g00228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193