Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1799 ATGGGCGAAGCAAACGAAGCAGGAAGTAGAGGAATGGAGAAAGTTGTTCCTCTGCAAACTGAAAAGTACCCAACAGATCTGTTGCAGAGATTTTTGTGTAGTAATTCACGTCAGCCTCAAATTGGGGGTTTTAATGGAGAAGATGATGCAGAGGAGATTGAGCTTAATCTTGGGCTTTCACTTGGGGGTCGATTTGGGGTTGACAAGACTTCCACGAAGCTTCTTCGGTCTTCGTCGGTTGCTGCTACGATACCGATTTTGAGGGACGACGATACCTCTACTCCGGCGGCTGTATCGTACCCGGCGCTTATTCGGACTTCGTCTCTCCCGACTCCGGAGACGGAGGAGGAGTGGAGGAAGAGGAAGGAGTTGCAGACTTTGAGGCGAATGGAGGCCAAGAGGAGGCGGTTTGAGAAGCAGAGGAATAAGGATGGGGGGGTTGGGATGGGGACTGGCGGGTGTTTTGAAGAAGAGAGGCGTGAAATTGAAGGTCTTACAGGATTGAATTTGAGACAGAAAAGACCTTGTTTGGGTATTACGACGGTGCCGCCGCTGTTCGGATTACCGACGTGGGCTGCAGCCGCTCGACAGGCTCTTATCGGCGGAATTGGGGATGATGTTACCAAGGGAAAAGGCTGTACCTCCGGTGGTGGCAGTGGTAGTGGCGGAGGTTTACCGGGCGTTGGACAGCCTGCTTCGCAGTGCTCCGCCGAATCGCAGGGCGGAAGCTCGTCGGGGATGTCGGAATTGGACAGCAAACACATTCAAGGATCATGCAGTTACGGTGAGGCGAGAAGCTCCTCACAAGAACGAGGCAACCCAGAGGCTGCGGGTTCTTCAGGATCGAAGACGTGTGAAAACCCATCTGGCAGTTCCAAAGCAGAGACAAAAAATCCATCCAAGAAACCTGATTCGGACGAGAACAGGGGAAAAGAAACAGGAACGGGAACGGGAACGGGAACAGGAACGACATCGATGGAAGACATGCCTTGTGTGTTCACAATAGGGGATGGACCTGATGGGAGAAGGGTTGAAGGAATTCTTTACAAGTATGGAAAAGGGGAGGAAGTGAGGATAATGTGTGTTTGTCATGGGGACTTTCTGTCACCAGCTGAGTTTGTGAAGCATGCTGGTGGAAAAAATGTGGCTCACCCTTTAAGACATATAGTTGTCAATCCTAATTCTGGTCCTTTTTTGTGA 1200 51.0 MGEANEAGSRGMEKVVPLQTEKYPTDLLQRFLCSNSRQPQIGGFNGEDDAEEIELNLGLSLGGRFGVDKTSTKLLRSSSVAATIPILRDDDTSTPAAVSYPALIRTSSLPTPETEEEWRKRKELQTLRRMEAKRRRFEKQRNKDGGVGMGTGGCFEEERREIEGLTGLNLRQKRPCLGITTVPPLFGLPTWAAAARQALIGGIGDDVTKGKGCTSGGGSGSGGGLPGVGQPASQCSAESQGGSSSGMSELDSKHIQGSCSYGEARSSSQERGNPEAAGSSGSKTCENPSGSSKAETKNPSKKPDSDENRGKETGTGTGTGTGTTSMEDMPCVFTIGDGPDGRRVEGILYKYGKGEEVRIMCVCHGDFLSPAEFVKHAGGKNVAHPLRHIVVNPNSGPFL 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 54712552 54715385 - Hsped.10g17990.1 Hepe10g1799 582346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1799 399 MobiDBLite consensus disorder prediction 297 311 - -
Hepe10g1799 399 MobiDBLite consensus disorder prediction 232 296 - -
Hepe10g1799 399 Pfam Putative nuclear localisation signal in Ninja/AFP proteins 103 140 IPR032310 -
Hepe10g1799 399 Pfam Tify domain binding domain 358 391 IPR032308 -
Hepe10g1799 399 MobiDBLite consensus disorder prediction 214 329 - -
Hepe10g1799 399 Pfam Ethylene-responsive binding factor-associated repression 48 82 IPR012463 -
Hepe10g1799 399 PANTHER AFP HOMOLOG 2 2 394 IPR031307 GO:0005634(PANTHER)|GO:0007165(InterPro)|GO:0009737(PANTHER)|GO:0045892(PANTHER)
Hepe10g1799 399 Coils Coil 120 140 - -
Hepe10g1799 399 MobiDBLite consensus disorder prediction 312 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1839 Hepe-Chr6:69499366 Hepe10g1799 Hepe-Chr10:54712552 1.48e-21 transposed
Hepe10g1799 Hepe-Chr10:54712552 Hepe07g2460 Hepe-Chr7:68927265 7.71e-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1799 - - - 0.0