Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1802 ATGGATCCTCCACCCTCCTACCGCAGTCGCAGAACCACCAACAAATCTGACCTCTACTCCACCGTTGTCATCCATTCCAATTCTGGTTCCGACTCCGACAACAATCCCAACGACCGGATCCTCCGACGAAGACCGCCGAGCGAAGCTCAAGACCTGTACGCTACAATGGTCTATAAGGACGTTGCTAAGGGCCGCGAGGACGACGATGACGATGATTCCTCTCTCCCTCCTCTCCTCAAACGTCTTCCTAAGGATTTCGGTGGTGGAGCCCCAATTGACTATTTAGAAGAGGATGATGATTATGGATTTGATCACGATACGGAAGACTTTGGTACTATGATCGTCAAGACGGATAGGAATCGTCCTCGTAATCGCTCTGCGTCTTCTTCGGTTTCGACGAAGCCTCGAAGTTCACCGTTGACGAGAGGAGGTGCTAGTGAGGAAGGCGACGAGAGCGAGGAAGATGATGATGGTGGTGGGTATTCGACGTTTGTGGTGAGATCCACGGCGAGGTCGCGGAACAGAGAATCTGTTAGTGGGACTGTTCTTCGAAGGACCGTTGGGAGTCGTAGTGATACCAGAGATGGAGACGGAGGATTTGACGGGTCCACAATGGGCAGAGCGGTGGCGAGTATGCAAGGAATGGGAGACTTAGGGTTTGGGAAGCCGAGGAAGGGGAATGTATCGCCGAGGAGTGAGGAAGGCGGTGGTCGGATGCGCAGTAAGGTATCTTCGAGTTCGATTCCTGAAAGCATCACCAGAGAAGATCCACATTCTAAGTATGAATTGCTCAACGAACTCGGAAAGGGGTCCTATGGGGCTGTGTATAAAGCAAGGGATATTAAGACCTCTGAACTGGTTGCTATCAAGGTCATTTCATTGTCTGAAGGGGAGGAAGGATATGAAGAAATCCGTGGTGAAATAGAGATGTTGCAGCAATGCAGTCATCCAAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAGGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGATTTGATGAATGTTACTGAGGAAGCTCTAGAAGAATATCAAATAGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCATTCAATATTCAAAGTTCATAGAGATATCAAGGGTGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGCGATTTTGGAGTTGCAGCCCAGCTGACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATACGATGGGAAGGTGGATGTGTGGGCTCTTGGTGTTTCTGCTATAGAAATGGCTGAGGGGATGCCTCCAAGATCAGCAGTGCATCCAATGAGGGTTTTATTCATGATATCTATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCATTGCTGTTCCACGATTTTATTGCGAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAGATGTTGAAGCACAAACTCATTGAGAAATGTAGATGTGGGGCATCAGCAATGTTGCCCAAAATTGAAAAGTCTAGGAAAATCAGGACTTTAATGGCTCAACAAGCACATATTATTGATCCAGATGCATCAGGGGATGGTACAATAGTAGCTGCAAAGCTGAATCACGATTATGGAGATACTGTTCCTTCAAAGCCTCAGAATATCGGACTTCAGGTAGCAAATGAAATGCCAGCTGGTGGCACTTGGTGGAGGCAAGAGCAATCAGGTGCGGATTTTGTAGCAGAAGGTACTTTTGGCACTGTAATAATCCATGATGGAGATGAGAATGATAAGGTGGCTTCTCAATTGGATATTGGCAATGCTGAACCGCCAATTGGTCTTTTACGCAATGAGAGCCTATCCGTTAGTGGTGTAACTGGAGTAAAAAATGTCGACTCTAGTATTCTTGATGGAAAATCGGATCCCACAATGAATGCATATTCACCTTCATTTTTGGGTATTCATGAGCATAACATATTGAAGAATGAAACTGTCAGCCGAAAATCTTTTGCTCTGCAGGACAAGCTTTGGTCCATTTATGCAGCGGGTAATACTGTACCGATTCCGTTCTTGAGGGCTACTGATATATCCCCTATTGCTTTGTTATCTGACAATGTCCTCGGAGGCATGCAACACGATAATAGGGGTACTGTAGCAGTGGAAACGCTTCAGGAACTTTTCATTGGTGATGGACAATCGAAAAAGGGTCGTAGGGGACAAAATGAGATGCCCCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCAACACTACTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTACGAAGATATGCCGCTTCAAGAGTTGCAGGCGACTCAAGAACAACAAACCATTGAAAATCTTTGTGATACACTTAGAACTATCCTTCGATTGTAG 2475 46.02 MDPPPSYRSRRTTNKSDLYSTVVIHSNSGSDSDNNPNDRILRRRPPSEAQDLYATMVYKDVAKGREDDDDDDSSLPPLLKRLPKDFGGGAPIDYLEEDDDYGFDHDTEDFGTMIVKTDRNRPRNRSASSSVSTKPRSSPLTRGGASEEGDESEEDDDGGGYSTFVVRSTARSRNRESVSGTVLRRTVGSRSDTRDGDGGFDGSTMGRAVASMQGMGDLGFGKPRKGNVSPRSEEGGGRMRSKVSSSSIPESITREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLSEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGMPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFIAKCLTKDPRSRPAASEMLKHKLIEKCRCGASAMLPKIEKSRKIRTLMAQQAHIIDPDASGDGTIVAAKLNHDYGDTVPSKPQNIGLQVANEMPAGGTWWRQEQSGADFVAEGTFGTVIIHDGDENDKVASQLDIGNAEPPIGLLRNESLSVSGVTGVKNVDSSILDGKSDPTMNAYSPSFLGIHEHNILKNETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGMQHDNRGTVAVETLQELFIGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIENLCDTLRTILRL 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 54764390 54780382 + Hsped.10g18020.1 Hepe10g1802 582349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1802 824 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 209 544 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
Hepe10g1802 824 MobiDBLite consensus disorder prediction 113 257 - -
Hepe10g1802 824 Pfam Protein kinase domain 261 514 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe10g1802 824 FunFam serine/threonine-protein kinase dst1 isoform X1 258 548 - -
Hepe10g1802 824 ProSiteProfiles Protein kinase domain profile. 261 515 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe10g1802 824 SMART serkin_6 261 515 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe10g1802 824 MobiDBLite consensus disorder prediction 24 101 - -
Hepe10g1802 824 ProSitePatterns Protein kinases ATP-binding region signature. 267 290 IPR017441 GO:0005524(InterPro)
Hepe10g1802 824 MobiDBLite consensus disorder prediction 124 140 - -
Hepe10g1802 824 CDD STKc_MAP4K3_like 260 515 - -
Hepe10g1802 824 MobiDBLite consensus disorder prediction 60 78 - -
Hepe10g1802 824 MobiDBLite consensus disorder prediction 165 187 - -
Hepe10g1802 824 SUPERFAMILY Protein kinase-like (PK-like) 258 516 IPR011009 -
Hepe10g1802 824 FunFam Aurora kinase A 253 342 - -
Hepe10g1802 824 Gene3D Transferase(Phosphotransferase) domain 1 257 549 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1802 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1400 Hepe-Chr1:79237830 Hepe10g1802 Hepe-Chr10:54764390 7.33e-75 dispersed
Hepe06g0942 Hepe-Chr6:57015303 Hepe10g1802 Hepe-Chr10:54764390 2.09e-53 dispersed
Hepe08g2400 Hepe-Chr8:64535641 Hepe10g1802 Hepe-Chr10:54764390 6.17e-30 dispersed
Hepe09g0895 Hepe-Chr9:8971228 Hepe10g1802 Hepe-Chr10:54764390 8.20e-42 dispersed
Hepe10g1534 Hepe-Chr10:52091184 Hepe10g1802 Hepe-Chr10:54764390 1.82e-24 dispersed
Hepe10g1802 Hepe-Chr10:54764390 Hepe07g2572 Hepe-Chr7:70177967 1.13e-27 dispersed
Hepe10g1802 Hepe-Chr10:54764390 Hepe02g1817 Hepe-Chr2:27204815 5.87e-54 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe01g1400 . 1 694 MAP Kinase Kinase Kinase Kinase AT1G53165 62.9 3.2e-222 768.5
Hepe10g1802 . 259 519 MAP Kinase Kinase Kinase Kinase AT1G53165 52.3 5.8e-67 252.7
Hepe01g1400 . 1 693 MAP Kinase Kinase Kinase Kinase AT3G15220 64.5 1.6e-229 792.7
Hepe10g1802 . 259 519 MAP Kinase Kinase Kinase Kinase AT3G15220 50.8 2.6e-67 253.8
Hepe10g1802 . 4 824 MAP Kinase Kinase Kinase Kinase AT1G69220 59.9 5.0e-243 837.8
Hepe02g1817 . 76 655 MAP Kinase Kinase Kinase Kinase AT5G14720 56.4 1.1e-187 653.7
Hepe02g3102 . 2 525 MAP Kinase Kinase Kinase Kinase AT5G14720 61.9 6.3e-175 611.3
Hepe06g0942 . 6 546 MAP Kinase Kinase Kinase Kinase AT5G14720 51.1 3.4e-144 509.2
Hepe05g1625 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 50.6 1.5e-96 350.9
Hepe06g0942 . 7 550 MAP Kinase Kinase Kinase Kinase AT4G24100 68.7 5.5e-201 698.0
Hepe02g1817 . 81 429 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 4.2e-132 469.2
Hepe06g0942 . 11 550 MAP Kinase Kinase Kinase Kinase AT4G10730 69.9 9.3e-206 713.8
Hepe02g1817 . 82 450 MAP Kinase Kinase Kinase Kinase AT4G10730 63.7 3.9e-135 479.2
Hepe02g1817 . 76 447 MAP Kinase Kinase Kinase Kinase AT1G70430 65.2 2.9e-139 492.7
Hepe02g1286 . 4 494 MAP Kinase Kinase Kinase Kinase AT1G70430 51.6 2.2e-134 476.5
Hepe06g0942 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 57.1 1.7e-118 423.7
Hepe02g1286 . 1 678 MAP Kinase Kinase Kinase Kinase AT1G79640 60.5 3.9e-217 751.5
Hepe02g1817 . 81 428 MAP Kinase Kinase Kinase Kinase AT1G79640 68.1 7.2e-147 518.1
Hepe02g1817 . 76 402 MAP Kinase Kinase Kinase Kinase AT1G23700 57.0 2.6e-98 356.3
Hepe02g1286 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 1.8e-86 317.0
Hepe06g0942 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.2 5.4e-75 278.9
Hepe02g3102 . 2 172 MAP Kinase Kinase Kinase Kinase AT1G23700 58.0 3.0e-49 193.4
Hepe05g1625 . 32 458 MAP Kinase Kinase Kinase Kinase AT4G14480 57.0 2.5e-136 482.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73200 PF00069 Pkinase 1.80E-68 CL0016 Hepe PK