Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1828 ATGTCCAGTGCAATGAAGACAAAGCCAATAATATCTTTGGCTGAACTTATCATAGCTTCCATCTCAGAAATCATAGATTCCACAGCGTGCACTGAACAAGAACATGGAAAATTTGTTGAGATTGGAAGCTACTTTTATCGAGCATCTCTGGCCATTATGGAGTTGCAAGCAATAGACCCGATAAGTTTTGATGAAATCCTCCAATCTCTAAACAAAAGCATCAATCTTGCAAAGGATCTTGTGGAAAAGTTCCTAACAGACATTCAATTAGTGTCAGATCCTGATCCAATTAGCATCATAGATCCACTAGAAGAGATGATAAAACAAATGGGTGAATGCTTGAACAAGATTGCAACCTTTACATTTGAGGATCAGAATTATGTGAAAATGGCAATTCTATCACTTTCAGAGGAGATGCAGAATATATCCACTAAAATTGTCCAAGCTCAAGCCATAGGGAACAAGCAAGAGACACAAACTTCTTCTTTGGAGGAACAATCAGAAAAAGAACCAGAAGTTATAGAAAAAGATCTATACCCCATTGACATGGACTGGGACACAAACCATCCACAATCCCCAGTTGCATCGGAGTCGAGTGAAGCTGTTACAAATACAAATGGAAGAAGCAAAATGAAGTATAGAAATGTTACAGCATCCTTGACAGAACTACCCTCAATGGCCCATTACATAGAACCACTCTTTGAGACTTTCATCTGTCCATTGACAAAGGATATCATGGATGATCCAGTTAGCCTAGAAACGGGAGTGTCATATGAAAGACAAGCAATTGTTGAGTGGTTTGAAGAGTTTGAAGAATCCGAGGAAATTTTCTGCCCAGTCACAGGGCAAAAGCTTGTGGCCAAAGCTTTTAATTCCAACAGAGCTCTAAAGTCTACAATAGAAAAATGGAAGGAGCGCAATGAGATAGCAACAATCAAAGTTGCCCGGGCCGCTCTGTCTTTAGCCAGTTCAGATGAAATGGTGCTTGAGGCAATCAAAGACCTGTCGGGCATCAGCAAAGGGAAGCAGTTCAACATAGAACGGATCTTCAATTTTGACATGTTACCTTTGCTCGTTAAGTTGCTGGAGTACAGAGACAAAGATGTTAGATATGCAGTTCTAGAGCTATTGCATCAAATGGCAGAAATCAATGAAGACAACAAGAAGATTATCTGTAACCAATTGGACATATCAAGAATGGTCAATCTACTATCAAGTGGTCACAGGTCCATCCGGAATACATCTTTGCTTCTGTTGCATGAACTTTCAAGATCCCAGTCATTGTCTGATCAAATTGGTTCAGTAACTGTGGGGATTTCGATGCTGATCATCATGAAGGATGATATGTCTGATGAATTTGCTTCAGAAAAGGCAGATGAAACCTTGAGAAACTTGGAGACATCTCCAACTAATATCAAGCTTATGGCAGAATTTGGACTCATGGAGCCCCTCTTAAGGCATCTTACTGAAGGTAGTGAGTGGACGAGAATAGAAATGGCAAGCTATCTTGGGGAGATTGTTATTAGACATGATTGTATGGCGAATGTAGCTGAGAGGGCCTCTCCATCTCTTGTCAAGATGGTGCACGAAGGAGATACACTTGTCCGAAAGGCGGCATTTAAAGCTCTATTGCAAATTTCATCTCACAGGCCTAATGGGGAAATACTAGCAACAGCTGGAACTGTACAAATCATGGCTGAGGAGATGTTCACTCGTACCATCTGTGATGAACTTAATGATCCAAAAACAGAAGCAGCTGAAATACTGGCAAATATATGCGAGTCCAGTCTTGATCTCGAGACACTTCAAGTCAATGCACATGGCTACACTATGAGTTCAGATTATGTAGTCTACAACATCATCGACTTGCTCAAGAACTCAACCCCAGATGAATTTAAATTTAGCACGAGCCTCATCAGAATACTATTATGCTTGACAAAATCTCCAATACCAATGGACACCATTGTTGCAGGTGTAAGAAACACTGAAGCATGTGATACCCTCATAGAGTTCATCAATAGTCCAGATGAAGAACTCGGAGTTGCGGCAATAAAACTGCTTATATCACTCTCCCCTTACATGGGCTTCACAATGGCAGAAAGACTCTGCAAAACCAGTGACCTAGTGGAGAATCTCATCGGTAGCTTTACCTGGACAAACCAAATCACAGAGAAGCAAGCACTCTCAGCAACATTCATAGCAAAACTACCTCATCACCAGAGCCCAACTCTCAACACCGTTCTCGTAAACAAGAACATCGTGCCGAATATCCTACAAACAATCAATCAACTACAAAGCAGTGGAACAAAAATGAGCAGATATGCAAGTGCTTTCCTAGAGGGTTCAGTGGGCATTCTAGTCAGATTCACAGCAACACTCTATGATCCACAAATGTTATCTGTAGCACAATTTCACAATTTAACATCAGTATTTACTAACCTGCTCACACAAACATCAAGCGACGAAGTTCAAAAGCTATCCGCAATTGGGTTGGAGAAGCTATCATCAGCATCCACAAATCTATCAAAACCCCTGGACACCAAAAGAAACAAGGTCATGAAATTTCTCCACTTACCCAAGCTTCAATCGCTAGGATCATCAAAGAAGGGTCACTTACGAGTATGCCCAGTTCACAAAGGCGCTTGTTCTTCACAGAAAACATTCTGTTTGGTCCATGCCAATGCAATCGAAAGGCTATTGACTTGTTTAAACAACGAGAACGAAGAGGTAGTTGAAGCAGCTCTGGCAGCCATTTGTACACTTGTTGATGACAAAGTGGATCTGGACACAAGTGTGAGCCTGTTGCTGAACGAATTTGACGCAATCAGGCATGTACTGAATGTGGTGAGAATGCACAAACAAGAATCTGTATGGCAGAAATCATTCTGGTTGATCGAGAAGTTCTTGCTCAAGGGCGGGGAAGAATCTCTTACCAATATATCGCAGGATAGATCGTTGCCCGCCATTTTGGTTACTGCTTCGAATGAAGGGGACGGCGAGATGAGGCAGATGGCAGAGAAGATATTGAGCCATTTGAATATGGTGCCAAATTTCTCTGCTCCTATTTATACTCTGTGA 3078 41.46 MSSAMKTKPIISLAELIIASISEIIDSTACTEQEHGKFVEIGSYFYRASLAIMELQAIDPISFDEILQSLNKSINLAKDLVEKFLTDIQLVSDPDPISIIDPLEEMIKQMGECLNKIATFTFEDQNYVKMAILSLSEEMQNISTKIVQAQAIGNKQETQTSSLEEQSEKEPEVIEKDLYPIDMDWDTNHPQSPVASESSEAVTNTNGRSKMKYRNVTASLTELPSMAHYIEPLFETFICPLTKDIMDDPVSLETGVSYERQAIVEWFEEFEESEEIFCPVTGQKLVAKAFNSNRALKSTIEKWKERNEIATIKVARAALSLASSDEMVLEAIKDLSGISKGKQFNIERIFNFDMLPLLVKLLEYRDKDVRYAVLELLHQMAEINEDNKKIICNQLDISRMVNLLSSGHRSIRNTSLLLLHELSRSQSLSDQIGSVTVGISMLIIMKDDMSDEFASEKADETLRNLETSPTNIKLMAEFGLMEPLLRHLTEGSEWTRIEMASYLGEIVIRHDCMANVAERASPSLVKMVHEGDTLVRKAAFKALLQISSHRPNGEILATAGTVQIMAEEMFTRTICDELNDPKTEAAEILANICESSLDLETLQVNAHGYTMSSDYVVYNIIDLLKNSTPDEFKFSTSLIRILLCLTKSPIPMDTIVAGVRNTEACDTLIEFINSPDEELGVAAIKLLISLSPYMGFTMAERLCKTSDLVENLIGSFTWTNQITEKQALSATFIAKLPHHQSPTLNTVLVNKNIVPNILQTINQLQSSGTKMSRYASAFLEGSVGILVRFTATLYDPQMLSVAQFHNLTSVFTNLLTQTSSDEVQKLSAIGLEKLSSASTNLSKPLDTKRNKVMKFLHLPKLQSLGSSKKGHLRVCPVHKGACSSQKTFCLVHANAIERLLTCLNNENEEVVEAALAAICTLVDDKVDLDTSVSLLLNEFDAIRHVLNVVRMHKQESVWQKSFWLIEKFLLKGGEESLTNISQDRSLPAILVTASNEGDGEMRQMAEKILSHLNMVPNFSAPIYTL 1025
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 55025134 55033109 + Hsped.10g18280.1 Hepe10g1828 582375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1828 1025 Pfam Armadillo/beta-catenin-like repeat 885 921 IPR000225 GO:0005515(InterPro)
Hepe10g1828 1025 ProSiteProfiles HEAT repeat profile. 354 388 IPR021133 -
Hepe10g1828 1025 ProSiteProfiles U-box domain profile. 232 310 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe10g1828 1025 SMART Ubox_2 236 303 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe10g1828 1025 Gene3D - 511 691 IPR011989 -
Hepe10g1828 1025 MobiDBLite consensus disorder prediction 153 172 - -
Hepe10g1828 1025 Pfam U-box domain 235 308 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe10g1828 1025 Gene3D - 789 1020 IPR011989 -
Hepe10g1828 1025 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 1019 IPR052608 -
Hepe10g1828 1025 Coils Coil 293 313 - -
Hepe10g1828 1025 Coils Coil 893 913 - -
Hepe10g1828 1025 Gene3D - 317 510 IPR011989 -
Hepe10g1828 1025 SUPERFAMILY RING/U-box 219 312 - -
Hepe10g1828 1025 SUPERFAMILY ARM repeat 620 1012 IPR016024 -
Hepe10g1828 1025 SUPERFAMILY ARM repeat 317 642 IPR016024 -
Hepe10g1828 1025 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 316 IPR013083 -
Hepe10g1828 1025 SMART arm_5 384 424 IPR000225 GO:0005515(InterPro)
Hepe10g1828 1025 SMART arm_5 468 508 IPR000225 GO:0005515(InterPro)
Hepe10g1828 1025 SMART arm_5 883 923 IPR000225 GO:0005515(InterPro)
Hepe10g1828 1025 SMART arm_5 342 382 IPR000225 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1828 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe08g1513 Hepe-Chr8:19068672 Hepe10g1828 Hepe-Chr10:55025134 1.93e-129 dispersed
Hepe09g1058 Hepe-Chr9:11285569 Hepe10g1828 Hepe-Chr10:55025134 9.47e-12 dispersed
Hepe10g1529 Hepe-Chr10:52040942 Hepe10g1828 Hepe-Chr10:55025134 8.79e-06 dispersed
Hepe10g1828 Hepe-Chr10:55025134 Hepe04g1125 Hepe-Chr4:66242902 1.16e-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1007 . Blo16g01073 . Bda11g01163 Bpe13g01362 . . . . Cmo18g01102 . Cma18g01080 . Car18g01002 Sed08g1853 Cpe09g00244 . Bhi07g01438 Tan04g0950 Cmetu03g1218 Lac13g0414 Hepe10g1828 . . Cla05g02371 Cam05g2539 Cec05g2569 Cco05g2608 Clacu05g2536 Cmu05g2395 Cre05g2512 . . . . Lsi04g00332 Csa05g02538 Chy10g01080 . . . . Bda11g01163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012245 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29