Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1843 ATGGGTGACAGTTTGGGTGAGGATGATTTAAGCGATCTGCCTCAGAGCATTATAGAATGCATTCTCGCTAGGTTACCGATTAGAGATGCCGTAAGAACAAGTATTTTATCAAGGAGATGGAGATACAAGTGGACCACTCTTCCTCAACTTGTGTTTGATGATGATTGTGTTGCTGTGTCCAACGATGGAATTTATGAAGACCTTATATATTTCATCACTCATGTTCTTCTTCTTCACGAAGGTCCAATTCATAAATTCCATCTTTCTGCTTCCTACTTACAGAATACCCCAGATTTAGATCAGTGGATGCTTTTCCTTTCCAGGAGGGGCATCAAGGAATTGGTTATTGAATTGGGAGACGGAGAGTGGTTTAGGGTTCATTCTTGTCTTTTTAATTGTAGCAAATTGACCCTTTTGGAGCTGTATCGTTGTGAATTGGATCCACCTCTTAACTTTAAGGGATTTTTATGTTTGAAATCTCTAAAACTTCATCAAGTTCTGATTGCACCCGATGACATTGAAAGTCTGATTTCTAATTGTCCACTCCTTGAGAATCTGGCGCTTTCCTACTTCGATAGTCTAGTGCTTAATATCTCTGCTCCAAAACTCAAGTACCTCTATCTTGAAGGTGAGTTTAGAGACATATGTCTTCAAAACACACCACTCTTGGTTGCAGTTTCAGTTGCATTGTATATGAGTGATGACACTGATCCCTTCGGCCATATTTCTGATTGCAATTTTGAGAAGTTTCTTGGTGGGGTGCCTTGTCTTGAGAAACTTACAGGGCATATTTATTTCACCAAGTATTTGAGTATAGGTAATAGTGCAAGAACTCTACCGGTTTCATATATCTATTTAAGGAGTATTGAACTGCACCAAGTCAGTTTTGAAGATATGAATGAGATACTTGTTGTGCTTCGGTTGATTACCAGCTCTCCGAATTTGGAGGAGCTTCACATTTCGGGTTCCTCAAACCCTGTGGCTGCTTCAGAAGCACCTGACTTGGACTTTTGGGAGAATGAATGTCCTTCGAACTGTGCATTCGGTAACCTAAGAGTTGTGAAAGCGTCGGATATGTCTGGTGTACCACACGAGATGGAATTTATTAAATATATGCTTAGAAATTCTCCAGTGCTCGAGACAATGACTGTCAAACCTTGTGTCTATGTTACAGATCGGCGATTGAATTTGTTGATTGAATTGTTAAAATTTAGGAGGGCTTCACCTGAAGCAGAAATTGTATTCATCCAATAG 1254 39.79 MGDSLGEDDLSDLPQSIIECILARLPIRDAVRTSILSRRWRYKWTTLPQLVFDDDCVAVSNDGIYEDLIYFITHVLLLHEGPIHKFHLSASYLQNTPDLDQWMLFLSRRGIKELVIELGDGEWFRVHSCLFNCSKLTLLELYRCELDPPLNFKGFLCLKSLKLHQVLIAPDDIESLISNCPLLENLALSYFDSLVLNISAPKLKYLYLEGEFRDICLQNTPLLVAVSVALYMSDDTDPFGHISDCNFEKFLGGVPCLEKLTGHIYFTKYLSIGNSARTLPVSYIYLRSIELHQVSFEDMNEILVVLRLITSSPNLEELHISGSSNPVAASEAPDLDFWENECPSNCAFGNLRVVKASDMSGVPHEMEFIKYMLRNSPVLETMTVKPCVYVTDRRLNLLIELLKFRRASPEAEIVFIQ 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 55152380 55154425 + Hsped.10g18430.1 Hepe10g1843 582390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1843 417 SMART 9598neu4hmm 345 416 IPR006566 -
Hepe10g1843 417 PANTHER F-BOX PROTEIN-LIKE 6 383 - -
Hepe10g1843 417 SUPERFAMILY F-box domain 6 79 IPR036047 GO:0005515(InterPro)
Hepe10g1843 417 Pfam F-box domain 10 47 IPR001810 GO:0005515(InterPro)
Hepe10g1843 417 CDD F-box_AtFBL13-like 10 45 IPR053781 -
Hepe10g1843 417 Pfam FBD 343 383 IPR006566 -
Hepe10g1843 417 Gene3D Ribonuclease Inhibitor 74 413 IPR032675 -
Hepe10g1843 417 SUPERFAMILY RNI-like 120 385 - -
Hepe10g1843 417 ProSiteProfiles F-box domain profile. 7 68 IPR001810 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1843 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe09g0067 Hepe-Chr9:573501 Hepe10g1843 Hepe-Chr10:55152380 4.37e-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1028 . . . . . . . . . Cmo18g01091 . . . Car18g00992 Sed06g1833 . . Bhi07g01411 Tan04g0933 Cmetu10g0062 Lac13g0428 Hepe10g1843 . . . . . . . . . . . . . . . . Cme10g00320 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007651 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34