Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1853 ATGTACAACACTTATGTCAATTCAACTGTATATTCCATCCGAAGTAAAGGGTCTCTTTCCCATTGCTTTAACGAACGTCCCATCTTCTTACATAAAAGATGTAATGGAAACCCATTGCATCTTTCATCATGTTGTTGTTCTTGTTGTGTTTGTTATGCATTTCCAACTCACAAAGTGCCTGTTGGCCCTAGCATTTTGTATGGGCCAAAGCAATCCACTCTGCTTCAATGGTCGATTTCTAGGAGGTTGATGATGGATGGCCGAAACCGGTTCGGTTACACGCTTCCGGAATATGGGCGTGTTCTGGATTGTTATGAGGTTCCTATTTCTGTTAGTGATGGTAGGAATTGTCATTGTAGTGAGGGAAGGAGATACAAAAGATGTTGTATGATTTCTGATAGTGATTGTGAATTTGATGAGTCAGATGGATTTGATGAAGGGGACATTGCTGAGGCAATGATCAGTTTGATTAGGGAGGGTTTTGGCAACCAGGGAAAAATTAGGTCATCTAAGAGAGTGGAAGTGGGGAACCAAAGAAAATCCGGAGCTAAGGAGAGAAATTTAAGTTCCTCGAGAAGAGTAGAACTGGAGAAAAGGGTGAAAAGAGGTGTTGAGGAGAAAAAGTTGAGTTCATTTGAAAAGATAAGAGTAGATAGAAAAAAAGAGAGTGATAGTCCACACGACAGAGAAGAGAGGAAAAACAATAAGTTTGGTTCTTTAAATGGTAAAACAAATTATAAAGTTGGATCAATCGCAGTTGAGTTGAGGAAAGATGGATATAGATTGAATGGAGATCAGTTAGTTCATTCTAGAGGTGATAGTCGGGGTTTAAGAAAAGAAGGGTCTACTTGTTCATCTTATTATTCACTTTCCTCTTCCGGGGATATTGAGAATGAAGCTGTAGTTGAAGATAAGAATGTGCAATTCGTGGAAGAATCGTCCAGTGGGCACCGATACGACTCCGTGAGTGAAGTGGGAGAAAAATTAGATGGGCAGATCAAAGAAGAGTTCAAGAGACAAGGAGACAAGGAGAAGGGGGGAGAAGAAGAATCAGTGCTAGGTGATACTACAATAGGGAATCGTGCCGATTGGCATTTGAGGAAGGACTCGGAGAAGAAACTTAGTGAAGTATCAACGAGAGTAACTTCCTCTGTAAGTGAAACCTCTGAGATGAACTCAAGATTGTCAAGGACCAGGGGAAGTGGTTATGTAAGTACTTTAAGTTCCAAGAAGAAGTTTGTTGACAAGGAAGATGAATTGAAAATGGCCGTGACTTTGAATGAGCAATCAAAACAATATGATGTATCAGGTAAGAAAGTGGGTGGTGTGTTTATATATGAAGGGAAAAAACTTGCAGAAGTATCAGAAATAAACCGCCTTAATGCAGAAGAAATTTCTCGTTCTCAGAAAAGGCTTACCATTAAGAGTGAAAACCTAGAATTAGATGCAAATCCCATCAAGAAAGCAAGCAACAACAATCAGGAAACTGTTCGTCCTGTCCTCCAAGAAAAAAGTTCAAGACGAAGTTCGTCGTTTCAACAACTCTTGGGAGTTTCAGAAAATAGGAAAACTGAGAGAGAAAGGATCTCTCATCAGACAAGCCAGTCTGATGCAGTGATAAATGCAAGTGAAAGTACAGATGTCCATGTAACCTCTAATCAAGAGGTTGAAGAAAGACATCATCAAATAGGAAATCATACCAGTGGAGAAATGGATTCAAGACAAAATTTTCTTCATCTTGGTGTTATATCAGTAATCAAAGAGGGTAATACCAACACCTCTGTTTCGAGTTCTGAAATTAGAACACAAAATGAAGAACAAAATGCAGCATCAGTTAATGCCTCAAATCTTGTGGCTAAAGACATAAAGTCTTCGACAGATAAAAAAGCTTCTCAGAGAGTTATTTCCAGAAAAGGTTCCCGAGATGGCACTGACATTTCAGGGGTTCATGGTTTCGATAAAATATCTGCTACGTATTCTGAAAAAACATTTGAAAATAGAATCTTCAAGCAAGAAACTAATAAATCATCAGTGGAAAAAACTGTCAAGGAAACCATAATAAGAAATAGTCAAAATAAGGACCGTGTGGTGCTTACTGAATCGGGAAAAGAGGCTAAAAATCATGTAGAAAAATCAAAAGTTCAAGGATCCATTAATTTAAGTTCCCAAAGTAGTTATCAAAGGATCGGTGTAAATGAGGAAGAAAATAAAAGCTCACAGGCAATGTTAATGCCTCCTCCATCTCAGCTTGTAGCTAGAGATCCATTGCGAATAGATTCTATGAGCGAAATGGCAAGCCAAGTAGTTTCCAGAAGAACATCAGGAAGCAGTTCAGGTGCTTCCTACATGCAGTCAGGGGGAAGTCCAGCTTTGCACCGTAAACCCTATAGAGGAAGTGGGGCAGATGAGAGTACTGGGGAGCTTGCATACCTTATCACTCCTGATGATACTCTAGGTTCAGCTGACCGTTTAGAGAGATCGTCTGCACAGTTTGTTGGGGAGTTCATTGAGAAGTCCAGGAATGAACTCTTAATTTCTGAAATCCATAAGGAAGAAAATATCTCTGAAGTTGATTTACTACATGAAGAGAAGCATGGACAGAAGAATTCTGTAGATTATCAAATGAAGGACCATGACTCAAGGCTCTCGCCAGGGAGTTCTGGAACTAAGGGTCCTTCTGATGAAATGTGGCATGTAATGGACTCAACTACCGGGCAGCCTCCCAAAACTGTCGATCCTGAGATTAGTGCACACAGTGAGAATGCAATTGTCAAGAGAAGTGGCAAATCCTTGTGGAACGTCATTTCAGACATAGTTCGTCTCCGTTGGAATTCACGTGCTGAAAGCTCTGATTCAGCTTTAAGATCAGGTGGAAGAACTTCACCTAACGAGTCTGTTAGTAATGAGACATGGTTTTCTGGCCGTGAAAATGAGGAGACTGATAATACAAAAATGGGAAGAACCACAGTTTCTGAATTCACTTCTTCGGGTCGGTTGGAAGATCCAAATCCTTCTGCCCAAGGCCAAGATTTATCTGATGATAAGAAAGCAAAAAGTATATATTATGAAGTAGATACCCCATCTTCCCCAAATGTAATGGAGACCGGGCCATCAGGTGGGACTTTGTTAGTTTCTGGAGAAGCAATCTTAACAGATGGTAGGAAGGTTGACGTTATTTCTTCTGGTTTGGATATAGGACAGTCATCATTACCACTGTCTCGCCAAAGCATAAGACGATCTCCCGTCAGTGAAGAAATTTCTCATAGTGGTAAAACTGATGCCTTTGCAAGCAGCTCTGCAGAGCAGTTGGGGCATTCTTCTGATGCAACATTATCAGAGATATCAACAACTGGAACTAAGGATGGGGAAGTGAAACAAAGGAAGCTTCAAAGAAACAAGCAAGTTCCAAAAGATCGGTTTGAGGAATGGGAAGAAGCATTCATACTTGAAACTGAGCAGCGAAAAATGGACGAAATGTTTATGAGGGAAGCGCTTGCTGAAGCCAAGAAGGCGGCTGATACTTGGGAGGTGCCTGTTGGAGCAGTATTGGTGAAACATGGAAAAATTATTGCTCGTGGCTACAACCTGGTCGAAGAGTTGCGAGATTCCACAGCCCATGCAGAAATGATTTGTATTCGAGAGGCTTCAAAGCAATTAAAGACATGGAGGCTTGCTGAGACCACTCTCTATGTGACACTTGAGCCGTGCCCTATGTGCGCTGGAGCGATACTACAAGCACGAATCGAAAATCTTGTGTGGGGAGCACCAAATAAGCTTCTTGGAGCTGATGGCAGCTGGATCAGACTTTTTCCTGATGGTAGGGAGGGTGGGGAGGGAAACGTCTCAGAACAGTCTGAGAAGCCTGCTGCACCCGTCCATCCGTTCCACCCGAAAATGACGATTCGACGAGGTGTATTGGCATCAGAATGTTCAGATGTAATGCAACATTTCTTTCAGCTAAGGAGAAGGAAGAAGCAAAAGAAAGAAAACACTGTACCTCTAACCATTGCACATCATCCATCAAAATTTATTACTAAGATGCACAATATTTTCCATATATTGTTCTGTTTGTAA 4074 41.07 MYNTYVNSTVYSIRSKGSLSHCFNERPIFLHKRCNGNPLHLSSCCCSCCVCYAFPTHKVPVGPSILYGPKQSTLLQWSISRRLMMDGRNRFGYTLPEYGRVLDCYEVPISVSDGRNCHCSEGRRYKRCCMISDSDCEFDESDGFDEGDIAEAMISLIREGFGNQGKIRSSKRVEVGNQRKSGAKERNLSSSRRVELEKRVKRGVEEKKLSSFEKIRVDRKKESDSPHDREERKNNKFGSLNGKTNYKVGSIAVELRKDGYRLNGDQLVHSRGDSRGLRKEGSTCSSYYSLSSSGDIENEAVVEDKNVQFVEESSSGHRYDSVSEVGEKLDGQIKEEFKRQGDKEKGGEEESVLGDTTIGNRADWHLRKDSEKKLSEVSTRVTSSVSETSEMNSRLSRTRGSGYVSTLSSKKKFVDKEDELKMAVTLNEQSKQYDVSGKKVGGVFIYEGKKLAEVSEINRLNAEEISRSQKRLTIKSENLELDANPIKKASNNNQETVRPVLQEKSSRRSSSFQQLLGVSENRKTERERISHQTSQSDAVINASESTDVHVTSNQEVEERHHQIGNHTSGEMDSRQNFLHLGVISVIKEGNTNTSVSSSEIRTQNEEQNAASVNASNLVAKDIKSSTDKKASQRVISRKGSRDGTDISGVHGFDKISATYSEKTFENRIFKQETNKSSVEKTVKETIIRNSQNKDRVVLTESGKEAKNHVEKSKVQGSINLSSQSSYQRIGVNEEENKSSQAMLMPPPSQLVARDPLRIDSMSEMASQVVSRRTSGSSSGASYMQSGGSPALHRKPYRGSGADESTGELAYLITPDDTLGSADRLERSSAQFVGEFIEKSRNELLISEIHKEENISEVDLLHEEKHGQKNSVDYQMKDHDSRLSPGSSGTKGPSDEMWHVMDSTTGQPPKTVDPEISAHSENAIVKRSGKSLWNVISDIVRLRWNSRAESSDSALRSGGRTSPNESVSNETWFSGRENEETDNTKMGRTTVSEFTSSGRLEDPNPSAQGQDLSDDKKAKSIYYEVDTPSSPNVMETGPSGGTLLVSGEAILTDGRKVDVISSGLDIGQSSLPLSRQSIRRSPVSEEISHSGKTDAFASSSAEQLGHSSDATLSEISTTGTKDGEVKQRKLQRNKQVPKDRFEEWEEAFILETEQRKMDEMFMREALAEAKKAADTWEVPVGAVLVKHGKIIARGYNLVEELRDSTAHAEMICIREASKQLKTWRLAETTLYVTLEPCPMCAGAILQARIENLVWGAPNKLLGADGSWIRLFPDGREGGEGNVSEQSEKPAAPVHPFHPKMTIRRGVLASECSDVMQHFFQLRRRKKQKKENTVPLTIAHHPSKFITKMHNIFHILFCL 1357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 55259829 55265969 + Hsped.10g18530.1 Hepe10g1853 582400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1853 1357 MobiDBLite consensus disorder prediction 771 802 - -
Hepe10g1853 1357 Gene3D Cytidine Deaminase, domain 2 1144 1334 - -
Hepe10g1853 1357 MobiDBLite consensus disorder prediction 337 358 - -
Hepe10g1853 1357 MobiDBLite consensus disorder prediction 484 558 - -
Hepe10g1853 1357 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 1135 1327 - GO:0009507(PANTHER)
Hepe10g1853 1357 MobiDBLite consensus disorder prediction 946 973 - -
Hepe10g1853 1357 MobiDBLite consensus disorder prediction 1073 1135 - -
Hepe10g1853 1357 MobiDBLite consensus disorder prediction 485 519 - -
Hepe10g1853 1357 Hamap tRNA-specific adenosine deaminase [tadA]. 1161 1322 IPR028883 GO:0002100(InterPro)|GO:0008251(InterPro)
Hepe10g1853 1357 MobiDBLite consensus disorder prediction 1120 1135 - -
Hepe10g1853 1357 CDD nucleoside_deaminase 1173 1268 - -
Hepe10g1853 1357 SUPERFAMILY Cytidine deaminase-like 1142 1324 IPR016193 GO:0003824(InterPro)
Hepe10g1853 1357 MobiDBLite consensus disorder prediction 946 1015 - -
Hepe10g1853 1357 MobiDBLite consensus disorder prediction 337 351 - -
Hepe10g1853 1357 MobiDBLite consensus disorder prediction 216 237 - -
Hepe10g1853 1357 MobiDBLite consensus disorder prediction 771 785 - -
Hepe10g1853 1357 MobiDBLite consensus disorder prediction 1090 1119 - -
Hepe10g1853 1357 MobiDBLite consensus disorder prediction 269 291 - -
Hepe10g1853 1357 MobiDBLite consensus disorder prediction 986 1010 - -
Hepe10g1853 1357 Pfam MafB19-like deaminase 1158 1268 IPR028883 GO:0002100(InterPro)|GO:0008251(InterPro)
Hepe10g1853 1357 MobiDBLite consensus disorder prediction 533 550 - -
Hepe10g1853 1357 FunFam tRNA-specific adenosine deaminase 1150 1332 - -
Hepe10g1853 1357 MobiDBLite consensus disorder prediction 167 194 - -
Hepe10g1853 1357 MobiDBLite consensus disorder prediction 866 914 - -
Hepe10g1853 1357 MobiDBLite consensus disorder prediction 216 241 - -
Hepe10g1853 1357 MobiDBLite consensus disorder prediction 172 194 - -
Hepe10g1853 1357 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 1155 1277 IPR002125 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1853 K11991 - - csv:101215576 2073.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1465 Hepe-Chr3:71427338 Hepe10g1853 Hepe-Chr10:55259829 2.77e-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010359 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32