Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1881 ATGGCTAGCAACGAAGCGAGACAGCCGCTGCTACCAACGTCGTCTAATACTCTTGGAACAAGGTTAATAGATATTCCTAGAAGCAAAAGACGTTTGAGGCGCACTAAGAGTGCTCCTCATGCAGATTCTCCACATACCGGCACCAGCACCAGTACCAGCACCGGCATGGCCACTTGTTCAACTCCACGTTCGGGATTAATTTTTGGAAATCTTCACTCGAGTTTTAGAAGAGCAGCCTTAGTTTTAATAATCTACTTGGGTATAGGAACTTTATGTTTTTACCTTGTCAGGTACCAAATCAAAGGGGAAAAAACAAACGGAATAGTTGATGCCATTTATTTCACTATTGTGACAATGACAACCGTTGGATATGGAGATCTTGTCCCAAACAGTCCTTCCTCAAAATTACTAGCTTGTGCTTTTGTTTTCACAGGAATGGCCCTAATTGGTCTAATGCTAAGCAATGCAGCCGATTATTTGGTAGAGAAGCAGGAAATCTTGCTATTTAAGGCCTTGCATACGCGCCAAAATGGTGGCCATTGTGACATTACAAAAGAATTTGATACTAATAAAGCTAGAAACAAGTGTATAGTGGTGTTTCTCTTTCTGCTTTTCTTCATCATTTCTGGGACTGTCTTTCTAGTTACCCTTGAGAAGTTGGATTTCATTGATGCCTTTTATTGTGTATGTTCTACCATCACCACCCTAGGCTATGGAGATAAAAGCTTCTCGACACGGTGGGGGCGTATCTTCGCCATTTTCTGGATCTTGATAAGTACCATCACCCTGGCTCAGTTTTTCCTTTACATTGCTGAGCTAAAGACTGAAATAAGGCAAAAATCTTTGGTAAAGTGGGTTCTAAGTAAAAAGGTGACAGACTTGGACCTCGAGGCTGCAGATCTTGACGATGACAGGGTCGTCGGGGCTGCAGAATTTGTCATATACAAGCTCAAAGAGATGGGGAAAATTACTGAAGATGACATTGCACCTGTGCTGAAGGAATTTGAGAATCTTGATGTTGATCAATCAGGAACCCTGTCCATATCAGATATAACACTTGCTCAATTGTCTTAA 1074 41.71 MASNEARQPLLPTSSNTLGTRLIDIPRSKRRLRRTKSAPHADSPHTGTSTSTSTGMATCSTPRSGLIFGNLHSSFRRAALVLIIYLGIGTLCFYLVRYQIKGEKTNGIVDAIYFTIVTMTTVGYGDLVPNSPSSKLLACAFVFTGMALIGLMLSNAADYLVEKQEILLFKALHTRQNGGHCDITKEFDTNKARNKCIVVFLFLLFFIISGTVFLVTLEKLDFIDAFYCVCSTITTLGYGDKSFSTRWGRIFAIFWILISTITLAQFFLYIAELKTEIRQKSLVKWVLSKKVTDLDLEAADLDDDRVVGAAEFVIYKLKEMGKITEDDIAPVLKEFENLDVDQSGTLSISDITLAQLS 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 55600857 55604072 + Hsped.10g18810.1 Hepe10g1881 582428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1881 357 ProSitePatterns EF-hand calcium-binding domain. 339 351 IPR018247 -
Hepe10g1881 357 FunFam Calcium-activated outward-rectifying potassium channel 1 72 167 - -
Hepe10g1881 357 Gene3D - 181 295 - -
Hepe10g1881 357 MobiDBLite consensus disorder prediction 41 57 - -
Hepe10g1881 357 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 78 289 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(PANTHER)|GO:0071805(InterPro)
Hepe10g1881 357 SUPERFAMILY Voltage-gated potassium channels 72 169 - -
Hepe10g1881 357 PRINTS Two pore domain K+ channel signature 234 243 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Hepe10g1881 357 PRINTS Two pore domain K+ channel signature 117 145 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Hepe10g1881 357 Pfam Ion channel 202 272 IPR013099 -
Hepe10g1881 357 Pfam Ion channel 81 161 IPR013099 -
Hepe10g1881 357 SUPERFAMILY Voltage-gated potassium channels 188 293 - -
Hepe10g1881 357 SUPERFAMILY EF-hand 284 352 IPR011992 -
Hepe10g1881 357 Gene3D - 70 169 - -
Hepe10g1881 357 MobiDBLite consensus disorder prediction 29 57 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g1454 Hepe-Chr7:48599026 Hepe10g1881 Hepe-Chr10:55600857 1.01e-119 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1881 K05389 - csv:101216032 573.163