Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1904 ATGATTCATTCTGGTTTCTTCCTTGCGGGGCCTTCGATAAATTCTGATGCTACTACGTCTTTCATACCAATTCCGGTCTCGCGAGAAGATGTCGCTACGGGTGACGATATCAGAAATGATACGTCTGATTTGCTTCCCCCTTCTTTATGGGTTAGAACGGCGATGAAAGTCTCTAGAGCCAGATGGTTCATTTTCTTGAGAAGAGTTTTTCACTATCAGAACGGATCGAGATCTGATCTTGGGCCGAATCCTTTCAATTCGGGTTCGTGGATGGCGATGGAACTTGTAGCTTTGTTGTTTCAGCTAATCATCTCAGTGTTTACTCTTTCCATTTCACAGACTGAGAGGCCAGTTTGGCCTATGAAATTGTGGATAGGTAGTTATGATCTTGGTTGTGTTCTTAGCTTATTGCTTCTCTATGGCCGCCATCGGTATCATTATCTAATGGAGGGAGATGGTAACAGTCTTTCGGATATCGAACAGCAGAGGAGCAATGAATCATCAAGGTACTCACATTTGATGAACAAATGCCGGACGTCTCTCGATCTTTTCTTTGCAATATGGTTTGTAATGGGCAATCTTTGGGTCTTCGATTCTCGCTTCGGGTCGTTTCAAAAAGCTCCCAAGCTACATCTACTATGCAGCTTCCTGCTAGCTTGGAATGCCATCTGCTACTCTTTCCCATTCATTCTGTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCCTTATAGGATATAACATTAACATGGGATCAACTGAAAAAGGAGCGTTGGACGATCAAATTTCCCAGCTACCTTGCTGGAGATACAAAGCAGTCAACACCAACATCAACCCCGGAAGTCAACCCGATAATAGCAATAGAGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGCCAAGTATATAGACAAGGAAGAAGTGAGACAGTTGCCTTGTTCCCATATGTTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATTACATCTTCATGCCCTCTTTATAAGGAAAGGTCGTTTTCAATGATCACTTCTGGTTATTTCGTTTCGGGTCCGTTGTGTAACTGTGGTGGCACTGCTTCTTTTATCTCAAATTCATTGGTGGAAGAAGATGGTGCAGGTGCGGATGTTAGAGAGGACAATTCTGTTGCTCTCCCTGCATCTTTCTGGGTTAGGGCAGCGATGAGAGTGTCTAGAGCCAGGTGGTTCATATTCTTACGAAGAGTGTTTCACTACCAGAACGGATCAAGGTCGGATCTCGGGTCTGATCCTTTCAATTCTAGCTCGTGGATGGCGATGGAGCTGGTAGCTATGGTGTTTCAGCTAGCCATCACAGTGTTTTTTCTTGCCATTTCAGAGACTGAGAAGCCAGTTTGGCCTATGAGACTGTGGATAGTTGGTTATGATATTGGCTGCATTCTTAGTTTGTTGCTTCTCTATGGGCGCTATTGCCATCTTTATTTAATACGCGGTGACCGTGTCGGTCTTTCTGATACCGAGCAGCGGAGGAACAGTCAAGCGTCAAGGAGCTTGGGTTTGATGAACAGATGTCGGACGTCTCTTGAACTATTCTTTGCAATATGGTTTGTAATGGGTAATGTTTGGATCGTCGATTCTCGGTTCGGTTCTTTCGAAAGAGCTCCCAAGCTTCATCTGTTATGTGTCTTCCTGTTAGTTTGGAATGCCATCTGCTACTCCTTTCCATTCATTCTTTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCCTTCTAGGATATAACATTAACATGGCGTCAACCGACAAAGGAGCATCGGATGATCAAATTTCCCAGCTACCATGCTGGAGATATAAAGCTAGCTCAAAGAAACCTGATAGTAACAAAGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGTCAAGTACAGAGATGAAGAAGAAGTAAGACAGATGCCTTGTTCCCATTTGTTCCATCTCAAGTGTGTAGATAAGTGGCTTGCAATCACATCTTCCTGCCCTCTCTGTAAGCAACAACTTCAAAGATAG 2049 43.73 MIHSGFFLAGPSINSDATTSFIPIPVSREDVATGDDIRNDTSDLLPPSLWVRTAMKVSRARWFIFLRRVFHYQNGSRSDLGPNPFNSGSWMAMELVALLFQLIISVFTLSISQTERPVWPMKLWIGSYDLGCVLSLLLLYGRHRYHYLMEGDGNSLSDIEQQRSNESSRYSHLMNKCRTSLDLFFAIWFVMGNLWVFDSRFGSFQKAPKLHLLCSFLLAWNAICYSFPFILFLLLCCCVPLISSLIGYNINMGSTEKGALDDQISQLPCWRYKAVNTNINPGSQPDNSNRGLPKEDPECCICLAKYIDKEEVRQLPCSHMFHLKCVDKWLAITSSCPLYKERSFSMITSGYFVSGPLCNCGGTASFISNSLVEEDGAGADVREDNSVALPASFWVRAAMRVSRARWFIFLRRVFHYQNGSRSDLGSDPFNSSSWMAMELVAMVFQLAITVFFLAISETEKPVWPMRLWIVGYDIGCILSLLLLYGRYCHLYLIRGDRVGLSDTEQRRNSQASRSLGLMNRCRTSLELFFAIWFVMGNVWIVDSRFGSFERAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLISSLLGYNINMASTDKGASDDQISQLPCWRYKASSKKPDSNKGLPKEDPECCICLVKYRDEEEVRQMPCSHLFHLKCVDKWLAITSSCPLCKQQLQR 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 55831717 55838455 + Hsped.10g19040.1 Hepe10g1904 582451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1904 682 ProSiteProfiles Zinc finger RING-type profile. 299 340 IPR001841 -
Hepe10g1904 682 SMART ring_2 299 339 IPR001841 -
Hepe10g1904 682 SMART ring_2 636 676 IPR001841 -
Hepe10g1904 682 SUPERFAMILY RING/U-box 631 680 - -
Hepe10g1904 682 SUPERFAMILY RING/U-box 294 338 - -
Hepe10g1904 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 591 681 IPR013083 -
Hepe10g1904 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 343 IPR013083 -
Hepe10g1904 682 ProSiteProfiles Zinc finger RING-type profile. 636 677 IPR001841 -
Hepe10g1904 682 Pfam Ring finger domain 635 677 IPR001841 -
Hepe10g1904 682 Pfam Ring finger domain 298 338 IPR001841 -
Hepe10g1904 682 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 389 681 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g0296 Hepe-Chr10:3146774 Hepe10g1904 Hepe-Chr10:55831717 2.21e-52 dispersed
Hepe10g0546 Hepe-Chr10:6491903 Hepe10g1904 Hepe-Chr10:55831717 3.54e-08 dispersed
Hepe10g1749 Hepe-Chr10:54295838 Hepe10g1904 Hepe-Chr10:55831717 3.47e-09 dispersed
Hepe10g1904 Hepe-Chr10:55831717 Hepe05g0628 Hepe-Chr5:9836517 1.05e-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1904 - - - 0.0