Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1913 ATGGGTTCTGCTTCAGTTGCTGATTTAATAGAGGCCACCTCAGGCGTGCATTTTTCTGGACTTCATAGTTCGAAGAAACAAAATGGACATACGAGGAGCTTGATGTCGGAAACTGAAAAATTTCATAAACAACCTTTTGTCATTGGGGTTGCTGGTGGTGCGGCCTCTGGAAAGACAACAGTTTGTGATATGATCATTCATCAACTTCATGACCAGCGAGTCGTTCTTGTAAACCAGGATTCCTTCTATCATAATTTAACTTCCGAGGAACTTACACAAGTACATGAATACAACTTTGACCATCCTGATGCATTTGACACAGAGGAACTTCTAAGTTCAATGGATAAATTGAGGCATGGGGAGCCTGTAGATATTCCAAAATATGACTTCAAGAGTTATAAAAATAACGTGTTTCCACCAAGAAGGGTTAACCCTTCGGATGTTATCATTTTGGAAGGAATTCTTGTTTTCCATGACCCTCGCGTTCGAGAACTGATGAATATGAAGATATTTGTTGATACAGATGCTGATGTTCGTTTGGCGAGAAGGATAAGGCGTGATACTGTGGAGAAGGCTAGAGACATAGCTGCAGTACTTGATCAGTATTCAAAATTTGTAAAGCCTGCCTTTGATGACTTTATACTTCCAACGAAGAAGTATGCTGATATCATTATTCCCAGAGGGGGTGATAATCATGTTGCCATTGATTTGATTGTCCAACATATTCGCACAAAGCTTGGTCAGCATGATCTTTGTAAAATATACCCTAATTTGTATGTCATCCAGTCTACCTTTCAGCTACGAGGCATGCATACATTAATCAGAGATGCTAAAACTATGAAGCATGATTTCATATTTTATGCTGACCGATTGATTCGTCTGGTTGTTGAACATGGTCTGGGACATTTACCATTTATTGAAAAGCAGGTGACCACTCCAACTGGATCTGTATATAGTGGTGTTGATTTCTGCAAGAGGTTATGTGGTGTATCTGTCATCAGGAGTGGTGAGAGTATGGAAAATGCTCTGCGAGCATGTTGTAAAGGCATCAAAATTGGAAAGATTCTCATTCATAGGGAAGGTGACAATGGCCAACAGTTAATTTATGAAAAACTACCCTCGGATATCTCCAATAGGCATGTATTACTATTGGATCCCATCCTAGGCACAGGAAACTCGGCGGTGCAAGCTATTTCTTTGCTCATAAGCAAGGGTGTTCCAGAGCCTAATATTATATTTCTCAATCTCATATCAGCACCTCAAGGCGTACATGTGGTGTGTAAACGTTTTCCAAGAATAAAGATTGTGACATCTGAAATTGAGATCGGTCTGAATGAAGATTTTCGTGTGGTGCCTGGTATGGGTGAGTTCGGGGACCGATATTTTGGAACCGACGATGATGAACAAGTGAGGCCTCTCCACAGTAGTCGTTCTTTGAAGTAA 1443 40.54 MGSASVADLIEATSGVHFSGLHSSKKQNGHTRSLMSETEKFHKQPFVIGVAGGAASGKTTVCDMIIHQLHDQRVVLVNQDSFYHNLTSEELTQVHEYNFDHPDAFDTEELLSSMDKLRHGEPVDIPKYDFKSYKNNVFPPRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTVEKARDIAAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQLRGMHTLIRDAKTMKHDFIFYADRLIRLVVEHGLGHLPFIEKQVTTPTGSVYSGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPSDISNRHVLLLDPILGTGNSAVQAISLLISKGVPEPNIIFLNLISAPQGVHVVCKRFPRIKIVTSEIEIGLNEDFRVVPGMGEFGDRYFGTDDDEQVRPLHSSRSLK 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 55950207 55956474 + Hsped.10g19130.1 Hepe10g1913 582460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1913 480 Gene3D - 41 248 IPR027417 -
Hepe10g1913 480 Pfam Phosphoribulokinase / Uridine kinase family 47 233 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Hepe10g1913 480 CDD UMPK 47 245 IPR000764 -
Hepe10g1913 480 PRINTS Uridine kinase signature 191 202 - -
Hepe10g1913 480 PRINTS Uridine kinase signature 120 135 - -
Hepe10g1913 480 PRINTS Uridine kinase signature 45 62 - -
Hepe10g1913 480 PRINTS Uridine kinase signature 75 86 - -
Hepe10g1913 480 PRINTS Uridine kinase signature 213 226 - -
Hepe10g1913 480 PRINTS Uridine kinase signature 177 187 - -
Hepe10g1913 480 NCBIfam uridine kinase 44 245 IPR000764 -
Hepe10g1913 480 PANTHER URIDINE KINASE 37 403 - GO:0005737(PANTHER)
Hepe10g1913 480 Pfam Uracil phosphoribosyltransferase 263 464 - -
Hepe10g1913 480 FunFam Uridine kinase 42 248 - -
Hepe10g1913 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 238 IPR027417 -
Hepe10g1913 480 Gene3D - 249 464 IPR029057 -
Hepe10g1913 480 SUPERFAMILY PRTase-like 248 465 IPR029057 -
Hepe10g1913 480 CDD PRTases_typeI 322 437 IPR000836 -
Hepe10g1913 480 FunFam Uridine kinase 249 464 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1913 K00876 - - csv:101219714 916.376
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0973 Hepe-Chr2:11810287 Hepe10g1913 Hepe-Chr10:55950207 1.35e-256 dispersed
Hepe04g0824 Hepe-Chr4:62382133 Hepe10g1913 Hepe-Chr10:55950207 1.94e-15 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g1657 . 30 180 PRT Gene Family AT1G80050 75.5 5.0e-62 234.2
Hepe10g0243 . 33 175 PRT Gene Family AT1G80050 79.0 3.4e-58 221.5
Hepe08g1328 . 103 252 PRT Gene Family AT1G80050 69.3 3.5e-55 211.5
Hepe06g1149 . 30 165 PRT Gene Family AT1G80050 76.5 4.6e-55 211.1
Hepe10g0243 . 1 148 PRT Gene Family AT5G11160 81.8 9.6e-64 240.0
Hepe06g1657 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Hepe08g1328 . 81 218 PRT Gene Family AT5G11160 71.7 1.2e-53 206.5
Hepe06g1149 . 8 145 PRT Gene Family AT5G11160 73.2 3.4e-53 204.9
Hepe08g1328 . 74 255 PRT Gene Family AT1G27450 83.5 1.7e-82 302.4
Hepe06g1657 . 7 180 PRT Gene Family AT1G27450 74.1 2.1e-72 268.9
Hepe06g1149 . 7 165 PRT Gene Family AT1G27450 76.1 2.7e-67 251.9
Hepe10g0243 . 11 168 PRT Gene Family AT1G27450 72.8 8.9e-63 236.9
Hepe08g0964 . 76 554 PRT Gene Family AT2G16570 85.7 2.1e-240 828.6
Hepe08g0964 . 76 554 PRT Gene Family AT4G34740 86.3 5.0e-242 833.9
Hepe08g0964 . 27 527 PRT Gene Family AT4G38880 69.8 2.8e-194 675.2
Hepe08g1328 . 74 255 PRT Gene Family AT1G27450 83.5 1.7e-82 302.4
Hepe06g1657 . 7 180 PRT Gene Family AT1G27450 74.1 2.1e-72 268.9
Hepe06g1149 . 7 165 PRT Gene Family AT1G27450 76.1 2.7e-67 251.9
Hepe10g0243 . 11 168 PRT Gene Family AT1G27450 72.8 8.9e-63 236.9
Hepe06g1657 . 30 180 PRT Gene Family AT1G80050 75.5 5.0e-62 234.2
Hepe10g0243 . 33 175 PRT Gene Family AT1G80050 79.0 3.4e-58 221.5
Hepe08g1328 . 103 252 PRT Gene Family AT1G80050 69.3 3.5e-55 211.5
Hepe06g1149 . 30 165 PRT Gene Family AT1G80050 76.5 4.6e-55 211.1
Hepe06g1657 . 6 104 PRT Gene Family AT4G22570 82.8 5.3e-44 173.7
Hepe06g1149 . 5 97 PRT Gene Family AT4G22570 84.9 1.5e-43 172.2
Hepe08g1328 . 78 170 PRT Gene Family AT4G22570 80.6 1.8e-39 158.7
Hepe10g0243 . 11 100 PRT Gene Family AT4G22570 78.9 2.2e-37 151.8
Hepe06g1657 . 1 96 PRT Gene Family AT4G12440 84.4 1.1e-40 162.5
Hepe06g1149 . 1 96 PRT Gene Family AT4G12440 82.3 2.5e-40 161.4
Hepe08g1328 . 74 169 PRT Gene Family AT4G12440 78.1 2.6e-37 151.4
Hepe10g0243 . 4 99 PRT Gene Family AT4G12440 78.1 3.4e-37 151.0
Hepe10g0243 . 1 148 PRT Gene Family AT5G11160 81.8 9.6e-64 240.0
Hepe06g1657 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Hepe08g1328 . 81 218 PRT Gene Family AT5G11160 71.7 1.2e-53 206.5
Hepe06g1149 . 8 145 PRT Gene Family AT5G11160 73.2 3.4e-53 204.9
Hepe02g2821 . 1 186 PRT Gene Family AT1G71750 67.0 1.9e-71 265.8
Hepe10g1913 . 13 467 PRT Gene Family AT1G55810 85.3 3.7e-227 784.3
Hepe02g0973 . 19 482 PRT Gene Family AT1G55810 73.3 6.5e-200 693.7
Hepe10g1913 . 64 480 PRT Gene Family AT3G27440 74.4 1.8e-183 639.0
Hepe02g0973 . 80 482 PRT Gene Family AT3G27440 74.7 2.6e-179 625.2
Hepe02g0973 . 1 482 PRT Gene Family AT3G27190 86.3 1.3e-246 849.0
Hepe10g1913 . 3 466 PRT Gene Family AT3G27190 73.7 2.0e-207 718.8
Hepe04g0824 . 3 285 PRT Gene Family AT3G53900 67.2 1.4e-105 379.8
Hepe10g1913 . 1 467 PRT Gene Family AT4G26510 84.3 2.7e-233 804.7
Hepe02g0973 . 11 482 PRT Gene Family AT4G26510 75.4 1.7e-211 732.3
Hepe02g0973 . 1 482 PRT Gene Family AT5G40870 85.9 5.0e-246 847.0
Hepe10g1913 . 3 469 PRT Gene Family AT5G40870 73.0 5.0e-206 714.1