Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1945 ATGACTTTTTCATTGGAGATGCCAACATGGTTCTACATCAGCTTGCTGATTATGGCTACTACGGCAGCCGATGAAGTCGACCGGTCGACCATCGCCTTGCCGGGCTGCTCGTACCGATGCGGTGAAGTGGAGATTCCATACCCTTTTGGGCTTACTCCTGAATGCTCCCTCAATGAAGTATTTCTAGTCACTTGCAATAACTCCTTTAACCCCAACAAGCCGTTCGCCGGCGATGTTCCGATCATGAGTGTTTCGGTGGAAGATGGTGATTTGGTTATCGAGAATCTTGTCGCCAATTATTGTTTCGATGCCGATGGAAATATGTCCGGCCATAACCAAACGTTTCTCGAAACCGACAAGTTCGCCCTCTCGACGAAGAACATCTTCACCGCTGTCGGTTGCAGTACTGTCGTGATGATCGGAGGCATCCTCCAAGATGACGAGAATTACTTATCCGGATGTGCGTCGTTTTGCAATAGCTATCGAAATATGCCGAATGGGTCGTGCTCCGGCGTCGGGTGTTGCCAGATGGCAATTCCAGGCGGATTGAAACAGATGAATTTGACGGTGGCTGGGAGCGATATGACGAATGGGTCGGATATATTTTCGTGTGGTTACGGGTTCGTGGTGGAGGAGAGTGAGTTCAAGTTCTCGTCGGCTTATGTTCCACACTTTCCCAACGCCACAGTGCCAATGGTGTTGGACTGGTCTGTCGGGGACGAGCCGTGTGAGGTGGCTGTGGGTAGCCAAAGGTTTGCGTGTCAGGGAAATAGCAGCTGCCTGAACCCTGGCTTCATGGAGGGCTACCGCTGCAAGTGCTTGCAGGGATTCACTGGGAATCCATATTTGCCACATTTTGGTTGCCAGGACATCAATGAATGTGATGATCCAAATGGAAATGAGTGTACGGATATTTGTATAAATACGGTAGGAGGTTATGAATGTCGATGCCCAAATGGATACTCCGGCGATGGGAGAAAGGACGGCAATGGATGTGTTCGCCGCCGCCGGGTTCATGTTCTCCTGTTAGTTTTTGGTGTCGCGGTGGGCATAATGGCTTTACTAGTAAGTTGCTCTTGGTTCTACATCGGGTTCAAGAGATGGAAGCTCATAAAACTCAAATCAAATTTCTTCGAACGAAACGGAGGATTAATGTTAGAGCAACAGCTTTCAATCCGAAACGAAACCGCAAAAGTCTTCACTGCAGAGGAATTACAGAGAGCTACAAACAACTACTCCGACGATCGAATCGTCGGCAAAGGCGGCTTCGGAACCGTCTACAAAGGCATCCTCCCCACCGGCGCCGCCGTTGCCATCAAGAAATCCAAGATCGTCGACAAAACTCAGAACAAACAGTTCATCAATGAAGTCATCGTCCTCTCGCAGATCAATCACCGAAATGCAGTCAAACTCCTCGGCTGCTGTTTGGAAGAAGACGTTCCTCTTCTCGTCTACGAATTCGTCTCCAATGGCACGCTCTTCGATCACATCCACAAGCGAAAATCTCAATGGCCGATTCCTTGGAAGATCCGCCTCAAAATCGCCTCCGAAACCGCCGGAGTTCTCTCGTATCTTCACTCTTCCGCGACGATTCCGATCATTCACAGAGATGTGAAGTCGACGAACATTCTCCTGGACGAAAATTTCACAGCGAAGGTCTCCGATTTCGGCGCTTCGAAGCTAGTCCCGTTGGATCAGGTCGATTTGAACACGATCGTGCAAGGAACGCTTGGATACCTAGATCCAGAGTATTTGCAGACGAGTCAATTGACGGAGAAGAGCGATGTGTACAGTTTCGGCGTAGTTCTGGTCGAATTGATGACCGGAAAAGTTCCTCTGTCCTTCAGCCGATCGGAGGAAGAACGGAATCTATCGATGTACTTTCTAATCGCACTGAAACAGAATCGGCTTCGAGAAATTTTGGATAAAAACATGGGCGGCGATGTGGATTACGAGCAATTGAAAGAAGTTTCAAACCTTGCGAAGAGGTGTTTGAGAGTGAGGGGGGAAGAACGGCCGACGATGAAGGAGGTTGCTGCAGAGCTCGAAGGATTGTTTCAAATGGCGTTTGGTCATCCATGGATTGTTGATGATAAATCGTCAGAGCTTTTGCTTAGTGAAGAAAAGGAAAAGGAAAAGGAGCTTCGTGTTTATTCTGTTCGTCGTGATGTTCAAACGGACTGTACGGATGGGAGTAACCGATTTGATAGTTTTCCCATTAACCAAATGATATCAAAACCACATTCCGGGAGGTAA 2256 48.4 MTFSLEMPTWFYISLLIMATTAADEVDRSTIALPGCSYRCGEVEIPYPFGLTPECSLNEVFLVTCNNSFNPNKPFAGDVPIMSVSVEDGDLVIENLVANYCFDADGNMSGHNQTFLETDKFALSTKNIFTAVGCSTVVMIGGILQDDENYLSGCASFCNSYRNMPNGSCSGVGCCQMAIPGGLKQMNLTVAGSDMTNGSDIFSCGYGFVVEESEFKFSSAYVPHFPNATVPMVLDWSVGDEPCEVAVGSQRFACQGNSSCLNPGFMEGYRCKCLQGFTGNPYLPHFGCQDINECDDPNGNECTDICINTVGGYECRCPNGYSGDGRKDGNGCVRRRRVHVLLLVFGVAVGIMALLVSCSWFYIGFKRWKLIKLKSNFFERNGGLMLEQQLSIRNETAKVFTAEELQRATNNYSDDRIVGKGGFGTVYKGILPTGAAVAIKKSKIVDKTQNKQFINEVIVLSQINHRNAVKLLGCCLEEDVPLLVYEFVSNGTLFDHIHKRKSQWPIPWKIRLKIASETAGVLSYLHSSATIPIIHRDVKSTNILLDENFTAKVSDFGASKLVPLDQVDLNTIVQGTLGYLDPEYLQTSQLTEKSDVYSFGVVLVELMTGKVPLSFSRSEEERNLSMYFLIALKQNRLREILDKNMGGDVDYEQLKEVSNLAKRCLRVRGEERPTMKEVAAELEGLFQMAFGHPWIVDDKSSELLLSEEKEKEKELRVYSVRRDVQTDCTDGSNRFDSFPINQMISKPHSGR 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 56330880 56335516 - Hsped.10g19450.1 Hepe10g1945 582492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1945 751 CDD STKc_IRAK 418 685 - -
Hepe10g1945 751 ProSitePatterns Calcium-binding EGF-like domain signature. 290 315 IPR018097 GO:0005509(InterPro)
Hepe10g1945 751 CDD EGF_CA 290 324 - -
Hepe10g1945 751 ProSitePatterns Protein kinases ATP-binding region signature. 418 441 IPR017441 GO:0005524(InterPro)
Hepe10g1945 751 Pfam EGF-like domain 254 280 IPR000742 -
Hepe10g1945 751 Gene3D Laminin 293 334 - -
Hepe10g1945 751 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 32 686 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Hepe10g1945 751 Gene3D Laminin 242 292 - -
Hepe10g1945 751 SMART egf_5 242 289 IPR000742 -
Hepe10g1945 751 SMART egf_5 293 333 IPR000742 -
Hepe10g1945 751 FunFam Fibrillin 2 285 328 - -
Hepe10g1945 751 FunFam Wall-associated receptor kinase 2 385 487 - -
Hepe10g1945 751 ProSiteProfiles Protein kinase domain profile. 412 695 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe10g1945 751 SUPERFAMILY EGF/Laminin 289 325 - -
Hepe10g1945 751 Pfam Protein kinase domain 412 679 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe10g1945 751 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 306 317 IPR000152 -
Hepe10g1945 751 Pfam Calcium-binding EGF domain 290 327 IPR049883 -
Hepe10g1945 751 SUPERFAMILY Protein kinase-like (PK-like) 398 686 IPR011009 -
Hepe10g1945 751 Gene3D Transferase(Phosphotransferase) domain 1 488 692 - -
Hepe10g1945 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe10g1945 751 Gene3D Phosphorylase Kinase; domain 1 377 487 - -
Hepe10g1945 751 SMART egfca_6 243 289 IPR001881 GO:0005509(InterPro)
Hepe10g1945 751 SMART egfca_6 290 333 IPR001881 GO:0005509(InterPro)
Hepe10g1945 751 FunFam Wall-associated receptor kinase 2 488 704 - -
Hepe10g1945 751 ProSiteProfiles EGF-like domain profile. 290 324 IPR000742 -
Hepe10g1945 751 SMART serkin_6 412 695 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2383 Hepe-Chr1:88196568 Hepe10g1945 Hepe-Chr10:56330880 1.10e-117 dispersed
Hepe02g3355 Hepe-Chr2:83126701 Hepe10g1945 Hepe-Chr10:56330880 7.19e-91 dispersed
Hepe03g0537 Hepe-Chr3:10085753 Hepe10g1945 Hepe-Chr10:56330880 6.52e-223 dispersed
Hepe05g0319 Hepe-Chr5:3943871 Hepe10g1945 Hepe-Chr10:56330880 1.56e-82 dispersed
Hepe10g0684 Hepe-Chr10:9044214 Hepe10g1945 Hepe-Chr10:56330880 1.53e-75 dispersed
Hepe10g1945 Hepe-Chr10:56330880 Hepe10g1553 Hepe-Chr10:52258371 1.06e-64 dispersed
Hepe10g1945 Hepe-Chr10:56330880 Hepe02g2738 Hepe-Chr2:75877020 1.43e-239 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73204 PF00069 Pkinase 5.20E-51 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1945 - - - 0.0