Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1960 ATGTCGTTTCGTAGTATAGTCCGTGACGTTAGAGAGGGGTTTGGAAGTTTATCCAGGCGTAGTTTTGAGGTGAGACTGCCCAGTCACCATCGGGGTAAATCTCATGGATCAGTCCATGATTTGCATGACCAACCACTGGTAATACAGACCATCCGTTGGGCTAGCCTCCCACCTGAGCTATTGCGGGATGTAGTCATGAGATTGGAGGAGAGTGAGAGCGTGTGGCCTGCTCGCAAGCATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCATGGAGGGAAATGTGCAAAGAGATAGTAAAAAGTCCCGAGTTCTGCGGGAAAATTACCTTCCCTGTCTCCTTAAAGCAGCCAGGGACTCGCGATGGAACCATTCAGTGCTTCATTAAGAGGGATAAATCTAATTTGACTTACCATCTTTACCTATGCCTTAGTCCTGCTTTACTTGTTGATAACGGGAAGTTTCTTCTTTCTGCAAAAAGAACAAGGAGAACGACTTGCACTGAGTACGTGATCTCCATGGATGCGGATAATATATCGAGATCGAGCAACACCTACATTGGAAAACTAAGGTCAAATTTTCTAGGGACCAAGTTCATTATCTATGATACACAGCCTCCATACAACAACGCCCAGATTTCCCCACCTGGCCGTAGCCGTAGATTCTACTCGAAAAAAGTTTCTCCAAAGGTCCCAACTGGTAGCTATGACGTTGCACAAGTCACCTATGAGCTGAACGTTCTTGGCACGAGAGGCCCCCGAAAGATGCACTGCATGATGCACTCCATCCCCGCCTCGTCCATTGAGCCCGGTGGCAGTGTTCCTGGCCAGCCTGAGGTCGTCCCTCAACTCCTTGGGGATTCATTTCGAAGTATATCATTCTCGAAGTCCGTCTTCAGTTCTACAGATTTCAGTAGTTCCCGCTTCTCTGATATTGTTGGTTCACGGGATGAAGATGAAGTGGGGAAGGAGAGACTATTTATTCTTCGGAACAAGCCTCCGCGGTGGCACGAGCAGTTGCAGTGTTGGTGCCTTAATTTCCGGGGACGAGTAACTGTTGCCTCTGTCAAAAACTTTCAACTGATAGCTGCGACAGAGCCTTCTTCCACAGCTACAAACCAATCACAGCCAAACCAACACGCCCAATCTTCTCAATCGGACCATGACAAGATCATTCTTCAATTCGGGAAGGTCGGGAAGGACATGTTTACGATGGATTACCGATATCCATTATCAGCATTTCAAGCTTTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA 1293 47.1 MSFRSIVRDVREGFGSLSRRSFEVRLPSHHRGKSHGSVHDLHDQPLVIQTIRWASLPPELLRDVVMRLEESESVWPARKHVVACAAVCRSWREMCKEIVKSPEFCGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRFYSKKVSPKVPTGSYDVAQVTYELNVLGTRGPRKMHCMMHSIPASSIEPGGSVPGQPEVVPQLLGDSFRSISFSKSVFSSTDFSSSRFSDIVGSRDEDEVGKERLFILRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATEPSSTATNQSQPNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 56548708 56555878 + Hsped.10g19600.1 Hepe10g1960 582507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1960 430 CDD F-box_AtTLP-like 53 97 - -
Hepe10g1960 430 FunFam Tubby-like F-box protein 48 101 - -
Hepe10g1960 430 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Hepe10g1960 430 SUPERFAMILY Tubby C-terminal domain-like 102 430 IPR025659 -
Hepe10g1960 430 Gene3D Tubby Protein; Chain A 112 424 IPR025659 -
Hepe10g1960 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Hepe10g1960 430 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Hepe10g1960 430 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Hepe10g1960 430 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Hepe10g1960 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Hepe10g1960 430 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Hepe10g1960 430 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Hepe10g1960 430 MobiDBLite consensus disorder prediction 366 386 - -
Hepe10g1960 430 PANTHER TUBBY-RELATED 48 429 - -
Hepe10g1960 430 Pfam Tub family 114 425 IPR000007 -
Hepe10g1960 430 FunFam Tubby-like F-box protein 110 430 - -
Hepe10g1960 430 ProSitePatterns Tub family signature 2. 415 430 IPR018066 -
Hepe10g1960 430 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Hepe10g1960 430 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
Hepe10g1960 430 Gene3D - 48 101 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1960 K19600 - - csv:101206041 810.061
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2796 Hepe-Chr2:76933994 Hepe10g1960 Hepe-Chr10:56548708 4.31e-251 dispersed
Hepe03g0129 Hepe-Chr3:1546333 Hepe10g1960 Hepe-Chr10:56548708 2.11e-149 dispersed
Hepe07g0479 Hepe-Chr7:4924730 Hepe10g1960 Hepe-Chr10:56548708 5.29e-237 dispersed
Hepe07g0731 Hepe-Chr7:8734820 Hepe10g1960 Hepe-Chr10:56548708 7.37e-140 dispersed
Hepe07g0976 Hepe-Chr7:13300191 Hepe10g1960 Hepe-Chr10:56548708 1.10e-115 dispersed
Hepe10g1960 Hepe-Chr10:56548708 Hepe05g1485 Hepe-Chr5:64291328 4.71e-149 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe10g1960 . 1 430 TUB Transcription Factor Family AT1G76900 71.6 3.6e-174 608.2
Hepe07g0479 . 1 428 TUB Transcription Factor Family AT1G76900 70.6 2.4e-170 595.5
Hepe02g2796 . 1 432 TUB Transcription Factor Family AT1G76900 68.2 5.6e-167 584.3
Hepe03g0129 . 13 387 TUB Transcription Factor Family AT1G76900 50.8 1.2e-113 407.1
Hepe05g1485 . 13 387 TUB Transcription Factor Family AT1G76900 50.9 5.2e-112 401.7
Hepe07g0479 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 6.3e-102 367.5
Hepe02g2796 . 176 432 TUB Transcription Factor Family AT1G25280 69.9 4.1e-93 338.2
Hepe10g1960 . 173 430 TUB Transcription Factor Family AT1G25280 67.5 9.2e-93 337.0
Hepe07g0731 . 209 445 TUB Transcription Factor Family AT1G25280 55.8 2.9e-70 262.3
Hepe05g1485 . 154 387 TUB Transcription Factor Family AT1G25280 52.4 9.2e-69 257.3
Hepe03g0129 . 155 387 TUB Transcription Factor Family AT1G25280 53.9 1.2e-68 256.9
Hepe01g1672 . 181 408 TUB Transcription Factor Family AT1G25280 52.7 3.3e-66 248.8
Hepe04g1521 . 176 412 TUB Transcription Factor Family AT1G25280 52.8 1.2e-65 246.9
Hepe03g0129 . 99 387 TUB Transcription Factor Family AT5G18680 62.5 4.3e-99 358.2
Hepe05g1485 . 98 387 TUB Transcription Factor Family AT5G18680 61.5 1.2e-96 350.1
Hepe10g1960 . 112 430 TUB Transcription Factor Family AT5G18680 53.3 3.5e-85 312.0
Hepe02g2796 . 112 432 TUB Transcription Factor Family AT5G18680 51.5 1.2e-82 303.5
Hepe07g0479 . 113 428 TUB Transcription Factor Family AT5G18680 52.5 2.1e-82 302.8
Hepe07g0731 . 150 445 TUB Transcription Factor Family AT5G18680 52.8 2.4e-78 289.3
Hepe01g1672 . 117 408 TUB Transcription Factor Family AT5G18680 50.3 5.6e-75 278.1
Hepe07g0731 . 1 445 TUB Transcription Factor Family AT2G18280 58.3 3.0e-140 495.4
Hepe04g1521 . 1 412 TUB Transcription Factor Family AT2G18280 61.5 5.6e-139 491.1
Hepe01g1672 . 1 408 TUB Transcription Factor Family AT2G18280 57.1 9.0e-121 430.6
Hepe07g0479 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 4.2e-118 421.8
Hepe05g1485 . 1 387 TUB Transcription Factor Family AT2G18280 54.1 6.7e-116 414.5
Hepe10g1960 . 1 430 TUB Transcription Factor Family AT2G18280 52.5 6.7e-116 414.5
Hepe03g0129 . 1 387 TUB Transcription Factor Family AT2G18280 53.2 9.6e-115 410.6
Hepe02g2796 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 9.0e-113 404.1
Hepe07g0976 . 55 386 TUB Transcription Factor Family AT2G18280 52.0 3.6e-93 339.0
Hepe03g0129 . 1 387 TUB Transcription Factor Family AT2G47900 68.5 3.5e-160 561.6
Hepe05g1485 . 1 387 TUB Transcription Factor Family AT2G47900 68.0 4.6e-160 561.2
Hepe10g1960 . 1 430 TUB Transcription Factor Family AT2G47900 55.2 2.4e-132 469.2
Hepe07g0479 . 1 428 TUB Transcription Factor Family AT2G47900 56.2 2.6e-131 465.7
Hepe02g2796 . 1 432 TUB Transcription Factor Family AT2G47900 55.9 2.4e-129 459.1
Hepe04g1521 . 1 412 TUB Transcription Factor Family AT2G47900 54.3 4.6e-120 428.3
Hepe07g0731 . 1 445 TUB Transcription Factor Family AT2G47900 51.5 2.8e-117 419.1
Hepe01g1672 . 1 408 TUB Transcription Factor Family AT2G47900 55.3 3.1e-116 415.6
Hepe07g0976 . 55 386 TUB Transcription Factor Family AT2G47900 51.2 3.4e-99 359.0
Hepe03g1679 . 82 307 TUB Transcription Factor Family AT1G16070 59.1 8.3e-71 264.2
Hepe07g0479 . 66 428 TUB Transcription Factor Family AT1G43640 67.5 4.4e-146 514.6
Hepe10g1960 . 67 430 TUB Transcription Factor Family AT1G43640 69.7 5.7e-146 514.2
Hepe02g2796 . 65 432 TUB Transcription Factor Family AT1G43640 65.5 6.1e-140 494.2
Hepe03g0129 . 48 387 TUB Transcription Factor Family AT1G43640 52.6 4.0e-107 385.2
Hepe05g1485 . 49 387 TUB Transcription Factor Family AT1G43640 52.7 4.1e-104 375.2
Hepe01g1672 . 70 408 TUB Transcription Factor Family AT1G43640 50.7 6.2e-100 361.3
Hepe01g1672 . 34 408 TUB Transcription Factor Family AT1G47270 63.1 3.5e-133 471.9
Hepe04g1521 . 33 412 TUB Transcription Factor Family AT1G47270 59.2 4.5e-125 444.9
Hepe07g0731 . 35 445 TUB Transcription Factor Family AT1G47270 54.0 2.0e-117 419.5
Hepe07g0479 . 1 428 TUB Transcription Factor Family AT1G47270 51.9 7.3e-115 411.0
Hepe02g2796 . 48 432 TUB Transcription Factor Family AT1G47270 54.3 2.9e-111 399.1
Hepe03g0129 . 1 387 TUB Transcription Factor Family AT1G47270 50.2 7.8e-109 391.0
Hepe05g1485 . 1 387 TUB Transcription Factor Family AT1G47270 50.7 2.6e-104 375.9
Hepe07g0976 . 1 386 TUB Transcription Factor Family AT1G53320 72.0 2.0e-157 552.4
Hepe05g1485 . 33 387 TUB Transcription Factor Family AT1G53320 50.8 4.6e-98 355.1
Hepe07g0479 . 54 428 TUB Transcription Factor Family AT1G53320 50.3 1.6e-95 346.7
Hepe05g1485 . 98 387 TUB Transcription Factor Family AT3G06380 63.1 6.6e-97 350.9
Hepe03g0129 . 99 387 TUB Transcription Factor Family AT3G06380 63.1 1.8e-94 342.8
Hepe07g0479 . 117 428 TUB Transcription Factor Family AT3G06380 53.5 2.1e-82 302.8
Hepe02g2796 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 7.4e-80 294.3
Hepe10g1960 . 116 430 TUB Transcription Factor Family AT3G06380 50.2 6.2e-79 291.2
Hepe04g1521 . 118 412 TUB Transcription Factor Family AT3G06380 52.7 1.1e-78 290.4
Hepe07g0731 . 150 445 TUB Transcription Factor Family AT3G06380 52.7 1.1e-78 290.4
Hepe01g1672 . 121 408 TUB Transcription Factor Family AT3G06380 51.4 1.7e-76 283.1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56565 PF01167 Tub 3.00E-118 CL0395 Hepe TF