Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1960 ATGTCGTTTCGTAGTATAGTCCGTGACGTTAGAGAGGGGTTTGGAAGTTTATCCAGGCGTAGTTTTGAGGTGAGACTGCCCAGTCACCATCGGGGTAAATCTCATGGATCAGTCCATGATTTGCATGACCAACCACTGGTAATACAGACCATCCGTTGGGCTAGCCTCCCACCTGAGCTATTGCGGGATGTAGTCATGAGATTGGAGGAGAGTGAGAGCGTGTGGCCTGCTCGCAAGCATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCATGGAGGGAAATGTGCAAAGAGATAGTAAAAAGTCCCGAGTTCTGCGGGAAAATTACCTTCCCTGTCTCCTTAAAGCAGCCAGGGACTCGCGATGGAACCATTCAGTGCTTCATTAAGAGGGATAAATCTAATTTGACTTACCATCTTTACCTATGCCTTAGTCCTGCTTTACTTGTTGATAACGGGAAGTTTCTTCTTTCTGCAAAAAGAACAAGGAGAACGACTTGCACTGAGTACGTGATCTCCATGGATGCGGATAATATATCGAGATCGAGCAACACCTACATTGGAAAACTAAGGTCAAATTTTCTAGGGACCAAGTTCATTATCTATGATACACAGCCTCCATACAACAACGCCCAGATTTCCCCACCTGGCCGTAGCCGTAGATTCTACTCGAAAAAAGTTTCTCCAAAGGTCCCAACTGGTAGCTATGACGTTGCACAAGTCACCTATGAGCTGAACGTTCTTGGCACGAGAGGCCCCCGAAAGATGCACTGCATGATGCACTCCATCCCCGCCTCGTCCATTGAGCCCGGTGGCAGTGTTCCTGGCCAGCCTGAGGTCGTCCCTCAACTCCTTGGGGATTCATTTCGAAGTATATCATTCTCGAAGTCCGTCTTCAGTTCTACAGATTTCAGTAGTTCCCGCTTCTCTGATATTGTTGGTTCACGGGATGAAGATGAAGTGGGGAAGGAGAGACTATTTATTCTTCGGAACAAGCCTCCGCGGTGGCACGAGCAGTTGCAGTGTTGGTGCCTTAATTTCCGGGGACGAGTAACTGTTGCCTCTGTCAAAAACTTTCAACTGATAGCTGCGACAGAGCCTTCTTCCACAGCTACAAACCAATCACAGCCAAACCAACACGCCCAATCTTCTCAATCGGACCATGACAAGATCATTCTTCAATTCGGGAAGGTCGGGAAGGACATGTTTACGATGGATTACCGATATCCATTATCAGCATTTCAAGCTTTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA 1293 47.1 MSFRSIVRDVREGFGSLSRRSFEVRLPSHHRGKSHGSVHDLHDQPLVIQTIRWASLPPELLRDVVMRLEESESVWPARKHVVACAAVCRSWREMCKEIVKSPEFCGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRFYSKKVSPKVPTGSYDVAQVTYELNVLGTRGPRKMHCMMHSIPASSIEPGGSVPGQPEVVPQLLGDSFRSISFSKSVFSSTDFSSSRFSDIVGSRDEDEVGKERLFILRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATEPSSTATNQSQPNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 56548708 56555878 + Hsped.10g19600.1 Hepe10g1960 582507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1960 430 CDD F-box_AtTLP-like 53 97 - -
Hepe10g1960 430 FunFam Tubby-like F-box protein 48 101 - -
Hepe10g1960 430 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Hepe10g1960 430 SUPERFAMILY Tubby C-terminal domain-like 102 430 IPR025659 -
Hepe10g1960 430 Gene3D Tubby Protein; Chain A 112 424 IPR025659 -
Hepe10g1960 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Hepe10g1960 430 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Hepe10g1960 430 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Hepe10g1960 430 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Hepe10g1960 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Hepe10g1960 430 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Hepe10g1960 430 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Hepe10g1960 430 MobiDBLite consensus disorder prediction 366 386 - -
Hepe10g1960 430 PANTHER TUBBY-RELATED 48 429 - -
Hepe10g1960 430 Pfam Tub family 114 425 IPR000007 -
Hepe10g1960 430 FunFam Tubby-like F-box protein 110 430 - -
Hepe10g1960 430 ProSitePatterns Tub family signature 2. 415 430 IPR018066 -
Hepe10g1960 430 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Hepe10g1960 430 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
Hepe10g1960 430 Gene3D - 48 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2796 Hepe-Chr2:76933994 Hepe10g1960 Hepe-Chr10:56548708 4.31e-251 dispersed
Hepe03g0129 Hepe-Chr3:1546333 Hepe10g1960 Hepe-Chr10:56548708 2.11e-149 dispersed
Hepe07g0479 Hepe-Chr7:4924730 Hepe10g1960 Hepe-Chr10:56548708 5.29e-237 dispersed
Hepe07g0731 Hepe-Chr7:8734820 Hepe10g1960 Hepe-Chr10:56548708 7.37e-140 dispersed
Hepe07g0976 Hepe-Chr7:13300191 Hepe10g1960 Hepe-Chr10:56548708 1.10e-115 dispersed
Hepe10g1960 Hepe-Chr10:56548708 Hepe05g1485 Hepe-Chr5:64291328 4.71e-149 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56565 PF01167 Tub 3.00E-118 CL0395 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1960 K19600 - csv:101206041 810.061