Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1967 ATGGATGTCGACTCCGGCGAGGCGGTGGCTCAGCCAGCTGAAGCTGATAGCGGCGGTGGCGGCGGGTCGAATTCCGGTGAAGAAGATAAAGGGTTGTTATTGTTTGAAGATGGTGAGAAGAGTTTTGGTGGGAACAGGTGGCCTCGACAAGAGACTTTGGGTTTGTTGAAGATAAGATCTGATATGGATGCAGTTTTTAGAGATGCAACTCATAAAGCTCCATTGTGGGATGAAGTTTCAAGGAAGTTAGGAGAGCTTGGATTCAATCGAACTCCAAAGAAATGCAAGGAGAAATTCGAGAATGTTTATAAGTATCACAAAAGAACCAAAGAAGGTCGAACTGGCAAATCTGATAATAGCAAAAAAAATTATAGATTTTCCATTGAATTGGAGGCTTTTAGTACTCATCATCACAATCACATTTCATTTCAATCTCACCACCACCACCACCACCCGCCGCCATCAGTCCCTCGGCCGACGACGACGCTGCCGTCTCCTCCGGCGAAAATAATCACCTCTACTGTTCCATCGACCATGAACACAACAAACAACAACTCTTTGCCACCCAAACCCTCTAACCCTCTTTCCAATTTGCCAAACATGGCTGCGAATGTGATGTTTTCGAGCTCCACGTCGTCATCGACAGCGTCGGAGGAAGATCCGTTTCGGAGCAGGAGGAAGAGGAGAAAGAAGAGGAAGTGGAGTGATTTCTTTGTGAGGTTGACAAAGGAGGTGATAGAGAAGCAAGAGGGGCTTCAACTAAAATTCTTAGAAGCCTTGGAGAGAATAGAAAGTCAAAGGAAATTGAGAGATGAAGCATGGAGAATGAAAGAGATGACAAGGGTTAATCAAGAACATGAAGTTTTAGTCCGAGAGATGTCCATGGTTGCCGCGAAAGACGCTGCCGTCGTCGCATTCTTGCAAAAATTAGCCCCATCTCCATCTCCATCTCCATCTCCCCCACCGCGGCAGCCATCAACTCAGCCGCAGAGCGGCGAGAATAACGGAAAGATGACCACTGCTATGATCATTAGCCATCTTTCGAGTCAGCCGCAGAACGGTGAGAATAATGGAATCGGGAGGCATCTTTCGAGTCAGCCTCAGAACGGCGAGAATGGAAAGATGAGGACGGCTGCAGGAAGCCCATCAAGATGGCCAAAAGCTGAAGTAGAAGCATTGATAAGGCTTAGGACAGAAATGGAAATGAAGTATCAAGAGAATGGGCCAAAAGGGTTACTATGGGAAGAGATTTCAGCAGGCATGAGAGGGATTGGATACAATAGGAACTCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAAAAGGTGAAAGATAGCAGCAAGAAGAGGGCAGAAGACTCCAAGACATGTCCCTATTTTCACCAATTGGATGCTCTATATAGAGAGAAAGAAAAAAACATGAGTTTTGATATCAATACCCAAATGGAGCCATTGATGGTTGAACCAGAACAACAATGGCCACCTCCATTTCAACCCAATCAAATCATGGGAAATTTGCACACAATAAATGGTGAGGCAAATCAAGAGGAAGATGAAGAAGAAGATGAAGAAGAAGATGGAGGAAGTAGTAGCACAGATGTGGAAGATTGA 1623 44.98 MDVDSGEAVAQPAEADSGGGGGSNSGEEDKGLLLFEDGEKSFGGNRWPRQETLGLLKIRSDMDAVFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKEGRTGKSDNSKKNYRFSIELEAFSTHHHNHISFQSHHHHHHPPPSVPRPTTTLPSPPAKIITSTVPSTMNTTNNNSLPPKPSNPLSNLPNMAANVMFSSSTSSSTASEEDPFRSRRKRRKKRKWSDFFVRLTKEVIEKQEGLQLKFLEALERIESQRKLRDEAWRMKEMTRVNQEHEVLVREMSMVAAKDAAVVAFLQKLAPSPSPSPSPPPRQPSTQPQSGENNGKMTTAMIISHLSSQPQNGENNGIGRHLSSQPQNGENGKMRTAAGSPSRWPKAEVEALIRLRTEMEMKYQENGPKGLLWEEISAGMRGIGYNRNSKRCKEKWENINKYFKKVKDSSKKRAEDSKTCPYFHQLDALYREKEKNMSFDINTQMEPLMVEPEQQWPPPFQPNQIMGNLHTINGEANQEEDEEEDEEEDGGSSSTDVED 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 56649725 56652013 - Hsped.10g19670.1 Hepe10g1967 582514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1967 540 MobiDBLite consensus disorder prediction 313 327 - -
Hepe10g1967 540 MobiDBLite consensus disorder prediction 140 154 - -
Hepe10g1967 540 MobiDBLite consensus disorder prediction 494 540 - -
Hepe10g1967 540 MobiDBLite consensus disorder prediction 165 192 - -
Hepe10g1967 540 MobiDBLite consensus disorder prediction 208 229 - -
Hepe10g1967 540 Gene3D - 385 446 - -
Hepe10g1967 540 Gene3D - 47 108 - -
Hepe10g1967 540 MobiDBLite consensus disorder prediction 349 376 - -
Hepe10g1967 540 ProSiteProfiles Myb-like domain profile. 39 103 IPR001005 -
Hepe10g1967 540 MobiDBLite consensus disorder prediction 140 192 - -
Hepe10g1967 540 MobiDBLite consensus disorder prediction 1 47 - -
Hepe10g1967 540 FunFam Trihelix transcription factor GT-2 385 446 - -
Hepe10g1967 540 PANTHER FI21293P1 16 521 - -
Hepe10g1967 540 MobiDBLite consensus disorder prediction 349 386 - -
Hepe10g1967 540 FunFam Trihelix transcription factor GT-2 47 108 - -
Hepe10g1967 540 SMART sant 43 105 IPR001005 -
Hepe10g1967 540 SMART sant 381 443 IPR001005 -
Hepe10g1967 540 MobiDBLite consensus disorder prediction 501 515 - -
Hepe10g1967 540 ProSiteProfiles Myb-like domain profile. 383 441 IPR001005 -
Hepe10g1967 540 Pfam Myb/SANT-like DNA-binding domain 383 470 IPR044822 -
Hepe10g1967 540 Pfam Myb/SANT-like DNA-binding domain 45 118 IPR044822 -
Hepe10g1967 540 MobiDBLite consensus disorder prediction 518 540 - -
Hepe10g1967 540 MobiDBLite consensus disorder prediction 310 336 - -
Hepe10g1967 540 CDD GT1 45 110 - -
Hepe10g1967 540 Coils Coil 510 530 - -
Hepe10g1967 540 CDD GT1 383 448 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g0082 Hepe-Chr10:777614 Hepe10g1967 Hepe-Chr10:56649725 2.07e-09 dispersed
Hepe10g1966 Hepe-Chr10:56627531 Hepe10g1967 Hepe-Chr10:56649725 2.03e-107 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56568 PF13837 Myb_DNA-bind_4 1.10E-20 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1967 - - - 0.0