Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe10g1967 | ATGGATGTCGACTCCGGCGAGGCGGTGGCTCAGCCAGCTGAAGCTGATAGCGGCGGTGGCGGCGGGTCGAATTCCGGTGAAGAAGATAAAGGGTTGTTATTGTTTGAAGATGGTGAGAAGAGTTTTGGTGGGAACAGGTGGCCTCGACAAGAGACTTTGGGTTTGTTGAAGATAAGATCTGATATGGATGCAGTTTTTAGAGATGCAACTCATAAAGCTCCATTGTGGGATGAAGTTTCAAGGAAGTTAGGAGAGCTTGGATTCAATCGAACTCCAAAGAAATGCAAGGAGAAATTCGAGAATGTTTATAAGTATCACAAAAGAACCAAAGAAGGTCGAACTGGCAAATCTGATAATAGCAAAAAAAATTATAGATTTTCCATTGAATTGGAGGCTTTTAGTACTCATCATCACAATCACATTTCATTTCAATCTCACCACCACCACCACCACCCGCCGCCATCAGTCCCTCGGCCGACGACGACGCTGCCGTCTCCTCCGGCGAAAATAATCACCTCTACTGTTCCATCGACCATGAACACAACAAACAACAACTCTTTGCCACCCAAACCCTCTAACCCTCTTTCCAATTTGCCAAACATGGCTGCGAATGTGATGTTTTCGAGCTCCACGTCGTCATCGACAGCGTCGGAGGAAGATCCGTTTCGGAGCAGGAGGAAGAGGAGAAAGAAGAGGAAGTGGAGTGATTTCTTTGTGAGGTTGACAAAGGAGGTGATAGAGAAGCAAGAGGGGCTTCAACTAAAATTCTTAGAAGCCTTGGAGAGAATAGAAAGTCAAAGGAAATTGAGAGATGAAGCATGGAGAATGAAAGAGATGACAAGGGTTAATCAAGAACATGAAGTTTTAGTCCGAGAGATGTCCATGGTTGCCGCGAAAGACGCTGCCGTCGTCGCATTCTTGCAAAAATTAGCCCCATCTCCATCTCCATCTCCATCTCCCCCACCGCGGCAGCCATCAACTCAGCCGCAGAGCGGCGAGAATAACGGAAAGATGACCACTGCTATGATCATTAGCCATCTTTCGAGTCAGCCGCAGAACGGTGAGAATAATGGAATCGGGAGGCATCTTTCGAGTCAGCCTCAGAACGGCGAGAATGGAAAGATGAGGACGGCTGCAGGAAGCCCATCAAGATGGCCAAAAGCTGAAGTAGAAGCATTGATAAGGCTTAGGACAGAAATGGAAATGAAGTATCAAGAGAATGGGCCAAAAGGGTTACTATGGGAAGAGATTTCAGCAGGCATGAGAGGGATTGGATACAATAGGAACTCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAAAAGGTGAAAGATAGCAGCAAGAAGAGGGCAGAAGACTCCAAGACATGTCCCTATTTTCACCAATTGGATGCTCTATATAGAGAGAAAGAAAAAAACATGAGTTTTGATATCAATACCCAAATGGAGCCATTGATGGTTGAACCAGAACAACAATGGCCACCTCCATTTCAACCCAATCAAATCATGGGAAATTTGCACACAATAAATGGTGAGGCAAATCAAGAGGAAGATGAAGAAGAAGATGAAGAAGAAGATGGAGGAAGTAGTAGCACAGATGTGGAAGATTGA | 1623 | 44.98 | MDVDSGEAVAQPAEADSGGGGGSNSGEEDKGLLLFEDGEKSFGGNRWPRQETLGLLKIRSDMDAVFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKEGRTGKSDNSKKNYRFSIELEAFSTHHHNHISFQSHHHHHHPPPSVPRPTTTLPSPPAKIITSTVPSTMNTTNNNSLPPKPSNPLSNLPNMAANVMFSSSTSSSTASEEDPFRSRRKRRKKRKWSDFFVRLTKEVIEKQEGLQLKFLEALERIESQRKLRDEAWRMKEMTRVNQEHEVLVREMSMVAAKDAAVVAFLQKLAPSPSPSPSPPPRQPSTQPQSGENNGKMTTAMIISHLSSQPQNGENNGIGRHLSSQPQNGENGKMRTAAGSPSRWPKAEVEALIRLRTEMEMKYQENGPKGLLWEEISAGMRGIGYNRNSKRCKEKWENINKYFKKVKDSSKKRAEDSKTCPYFHQLDALYREKEKNMSFDINTQMEPLMVEPEQQWPPPFQPNQIMGNLHTINGEANQEEDEEEDEEEDGGSSSTDVED | 540 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 56649725 | 56652013 | - | Hsped.10g19670.1 | Hepe10g1967 | 582514 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe10g1967 | 540 | MobiDBLite | consensus disorder prediction | 313 | 327 | - | - | |
Hepe10g1967 | 540 | MobiDBLite | consensus disorder prediction | 140 | 154 | - | - | |
Hepe10g1967 | 540 | MobiDBLite | consensus disorder prediction | 494 | 540 | - | - | |
Hepe10g1967 | 540 | MobiDBLite | consensus disorder prediction | 165 | 192 | - | - | |
Hepe10g1967 | 540 | MobiDBLite | consensus disorder prediction | 208 | 229 | - | - | |
Hepe10g1967 | 540 | Gene3D | - | 385 | 446 | - | - | |
Hepe10g1967 | 540 | Gene3D | - | 47 | 108 | - | - | |
Hepe10g1967 | 540 | MobiDBLite | consensus disorder prediction | 349 | 376 | - | - | |
Hepe10g1967 | 540 | ProSiteProfiles | Myb-like domain profile. | 39 | 103 | IPR001005 | - | |
Hepe10g1967 | 540 | MobiDBLite | consensus disorder prediction | 140 | 192 | - | - | |
Hepe10g1967 | 540 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Hepe10g1967 | 540 | FunFam | Trihelix transcription factor GT-2 | 385 | 446 | - | - | |
Hepe10g1967 | 540 | PANTHER | FI21293P1 | 16 | 521 | - | - | |
Hepe10g1967 | 540 | MobiDBLite | consensus disorder prediction | 349 | 386 | - | - | |
Hepe10g1967 | 540 | FunFam | Trihelix transcription factor GT-2 | 47 | 108 | - | - | |
Hepe10g1967 | 540 | SMART | sant | 43 | 105 | IPR001005 | - | |
Hepe10g1967 | 540 | SMART | sant | 381 | 443 | IPR001005 | - | |
Hepe10g1967 | 540 | MobiDBLite | consensus disorder prediction | 501 | 515 | - | - | |
Hepe10g1967 | 540 | ProSiteProfiles | Myb-like domain profile. | 383 | 441 | IPR001005 | - | |
Hepe10g1967 | 540 | Pfam | Myb/SANT-like DNA-binding domain | 383 | 470 | IPR044822 | - | |
Hepe10g1967 | 540 | Pfam | Myb/SANT-like DNA-binding domain | 45 | 118 | IPR044822 | - | |
Hepe10g1967 | 540 | MobiDBLite | consensus disorder prediction | 518 | 540 | - | - | |
Hepe10g1967 | 540 | MobiDBLite | consensus disorder prediction | 310 | 336 | - | - | |
Hepe10g1967 | 540 | CDD | GT1 | 45 | 110 | - | - | |
Hepe10g1967 | 540 | Coils | Coil | 510 | 530 | - | - | |
Hepe10g1967 | 540 | CDD | GT1 | 383 | 448 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe10g0082 | Hepe-Chr10:777614 | Hepe10g1967 | Hepe-Chr10:56649725 | 2.07e-09 | dispersed | |
Hepe10g1966 | Hepe-Chr10:56627531 | Hepe10g1967 | Hepe-Chr10:56649725 | 2.03e-107 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56568 | PF13837 | Myb_DNA-bind_4 | 1.10E-20 | CL0123 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe10g1967 | - | - | - | 0.0 |