Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1981 ATGTCGTTAGTCGGGCCGTCCGATCCATCTCCGTTATCATACGGAAGTCGCAAGCTTTACTCATTGAAGGGAACCAAGAATGCTCCTGACTTGTCCACACAAAGATTTGGCTCCGAAAAGCACAGGACGATGTATATGAATGATTCAGATTGCAGTGAGAGCTATGAGAAGTATTTCCTCGATTTCCCGATTGAAGAGTTATCAATATCTGGCATTTCGACCAATTCTTTTCACCCCAACGCTGCCTTGTATGGGCTAAGGGCTGATTCTTTATCCCCTTTGTGTGATTCGTTTAATATTTTTGATGCTTATCAATCAAACTCAGACTCGGCTTGCCTTGAGAGTCCAGAACAGCTGGATTTTGAGGATGATCAAGTGAGACAGAAGTTGCAGGAATTGGAGAGAGATCTGATGGGAGAACCCGATGCTGCTGATTATGAGGACGAGATGTTTGCAAATGGCCAGAGCATGGAAATTGACAGCGAATGGGCAAATTCAATTCAAGATGCACTCCTTCATGACTCGCCAAAGGAATCGTCCTCGACAGATTCTAATTGTAGTACCATCAGCAGCAATAAGGATGCATCTCAGATATCTTCACAGAATCCCAGACAAATGCTTTTAGAATGTGCTTCTGCTATCTCAGAAGAGAACTTTGGAGAAGCATCAGCCATGATAGAACAGCTCCGAGGTATGGTATCAGTTCAGGGAGATCCCTCACAGAGGATTGCGGCTTATATGGTGGAAGGTCTTGCTGCCCGGTTATTGGAATCGGGAAAATGTCTTTATAAAGCTTTGAGATGCAAAGAACCTCCTTCCTCCGACCGTCTCGCAGCTATGCAGATCCTTTTTGAGGTCTGCCCCTGTTTCAAATTCGGCTTTGTGGCTGCAAATTGTGCCATTATCGAGGCAGCGAAAGATGAGAAGAGAATTCACATAATCGATTTCGATGTAAGCCAAGGAACTCAGTACATAAAATTGATTCAGATGCTAGCTGCTCAGCCAGGTAAGCCACCACACTTGAGGTTAACTGGTGTTGATGACCATGAATCGGTTCAGCGCCCCGTTGGAGGTCTTAGACACATTGGACAAAGACTTGAGCAACTGGCCAAAGCGCTGCGGGTTCCTTTTGAATTTCACGCGATTGCCTCAAATGCTTCAGATGTCACTCCCTCAATGCTCGCCTCCCGACCCGGAGAAGCACTCATAGTTAACTTTGCTTTTCTGCTTCACCACATGCCAGATGAAAGCGTTTCAACCGTAAATCTACGAGACAGGCTTCTCCGAATGGTCAAGAGCCTGAACCCGAAACTCGTAACAGTCGTCGAACAGGACATGAACACAAACACCACCCCATTCTTCTCAAGATTCGTTGAAGCCTATAACTACTACGCCGCTGTTTACGATTCTCTGGATGCAACCCTCCCAAGAGACAGTCAAGACAGAATAAATGTAGAAAGGCAGTGCTTGGCAAAGGACATAGTCAACATTGTAGCTTGTGAAGGTGAAGAAAGAGTAGAGAGATACGAAGTCGCCGGGAAATGGCGGGCAAGAATGACGATGGCTGGGTTCACTTCTTGTTCGATGAGCCAAAATGTGACCGACCCGATTCGCAAAATTATCGAGGAGTATTGTGACAGATTCAAGATGTATGAGGAAATGGGGACACTTCATTTTGGATGGGAAGAGAAAAGCTTGATTGTTACTTCAGCATGGAGGTAA 1722 45.59 MSLVGPSDPSPLSYGSRKLYSLKGTKNAPDLSTQRFGSEKHRTMYMNDSDCSESYEKYFLDFPIEELSISGISTNSFHPNAALYGLRADSLSPLCDSFNIFDAYQSNSDSACLESPEQLDFEDDQVRQKLQELERDLMGEPDAADYEDEMFANGQSMEIDSEWANSIQDALLHDSPKESSSTDSNCSTISSNKDASQISSQNPRQMLLECASAISEENFGEASAMIEQLRGMVSVQGDPSQRIAAYMVEGLAARLLESGKCLYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFVAANCAIIEAAKDEKRIHIIDFDVSQGTQYIKLIQMLAAQPGKPPHLRLTGVDDHESVQRPVGGLRHIGQRLEQLAKALRVPFEFHAIASNASDVTPSMLASRPGEALIVNFAFLLHHMPDESVSTVNLRDRLLRMVKSLNPKLVTVVEQDMNTNTTPFFSRFVEAYNYYAAVYDSLDATLPRDSQDRINVERQCLAKDIVNIVACEGEERVERYEVAGKWRARMTMAGFTSCSMSQNVTDPIRKIIEEYCDRFKMYEEMGTLHFGWEEKSLIVTSAWR 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 56869049 56872116 + Hsped.10g19810.1 Hepe10g1981 582528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1981 573 ProSiteProfiles GRAS family profile. 194 573 IPR005202 -
Hepe10g1981 573 MobiDBLite consensus disorder prediction 174 201 - -
Hepe10g1981 573 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 187 572 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Hepe10g1981 573 Pfam GRAS domain family 204 573 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1981 K27748 - - csv:101206511 1043.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1503 Hepe-Chr4:70630850 Hepe10g1981 Hepe-Chr10:56869049 2.98e-52 dispersed
Hepe06g0670 Hepe-Chr6:50468948 Hepe10g1981 Hepe-Chr10:56869049 6.81e-78 dispersed
Hepe07g0671 Hepe-Chr7:7768584 Hepe10g1981 Hepe-Chr10:56869049 1.70e-50 dispersed
Hepe08g0397 Hepe-Chr8:3565298 Hepe10g1981 Hepe-Chr10:56869049 2.71e-143 dispersed
Hepe08g0779 Hepe-Chr8:6977131 Hepe10g1981 Hepe-Chr10:56869049 1.33e-58 dispersed
Hepe10g1249 Hepe-Chr10:47888628 Hepe10g1981 Hepe-Chr10:56869049 3.85e-61 dispersed
Hepe10g1981 Hepe-Chr10:56869049 Hepe10g1983 Hepe-Chr10:56886243 2.37e-99 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g0168 . 42 749 GRAS Transcription Factor Family AT2G37650 53.2 4.3e-198 688.3
Hepe03g0643 . 289 736 GRAS Transcription Factor Family AT2G45160 54.3 6.8e-110 395.2
Hepe10g1249 . 307 681 GRAS Transcription Factor Family AT3G46600 55.5 7.1e-124 441.4
Hepe05g0168 . 285 749 GRAS Transcription Factor Family AT3G46600 50.3 8.7e-122 434.5
Hepe04g1304 . 66 476 GRAS Transcription Factor Family AT3G49950 61.1 3.4e-139 491.9
Hepe06g1136 . 423 795 GRAS Transcription Factor Family AT3G60630 50.9 2.5e-93 340.1
Hepe07g0684 . 83 531 GRAS Transcription Factor Family AT4G36710 53.6 1.5e-125 446.8
Hepe07g0886 . 68 446 GRAS Transcription Factor Family AT5G41920 69.9 1.4e-148 523.1
Hepe04g0646 . 443 835 GRAS Transcription Factor Family AT5G41920 55.5 2.6e-115 412.5
Hepe04g1503 . 1 613 GRAS Transcription Factor Family AT5G66770 56.6 5.0e-176 614.8
Hepe07g0671 . 1 587 GRAS Transcription Factor Family AT5G66770 56.2 6.3e-171 597.8
Hepe08g0397 . 57 545 GRAS Transcription Factor Family AT1G50600 58.6 5.3e-161 564.7
Hepe06g0540 . 46 545 GRAS Transcription Factor Family AT1G50600 56.9 6.5e-159 557.8
Hepe04g1711 . 111 549 GRAS Transcription Factor Family AT1G50600 56.4 4.4e-139 491.9
Hepe01g1320 . 213 583 GRAS Transcription Factor Family AT1G50600 62.3 8.5e-135 477.6
Hepe10g1981 . 193 573 GRAS Transcription Factor Family AT1G50600 50.4 1.4e-108 390.6
Hepe02g2646 . 40 574 GRAS Transcription Factor Family AT1G14920 69.1 1.1e-209 726.5
Hepe02g2393 . 54 577 GRAS Transcription Factor Family AT1G14920 62.2 5.2e-180 627.9
Hepe02g0993 . 29 544 GRAS Transcription Factor Family AT1G14920 58.1 6.8e-164 574.3
Hepe02g2393 . 54 578 GRAS Transcription Factor Family AT1G66350 62.5 2.0e-176 615.9
Hepe02g2646 . 42 572 GRAS Transcription Factor Family AT1G66350 59.6 2.5e-171 599.0
Hepe02g0993 . 1 548 GRAS Transcription Factor Family AT1G66350 57.4 7.4e-168 587.4
Hepe08g0779 . 222 746 GRAS Transcription Factor Family AT1G07520 51.5 2.1e-141 499.6
Hepe08g0397 . 99 545 GRAS Transcription Factor Family AT5G48150 72.4 1.2e-191 666.4
Hepe06g0540 . 17 545 GRAS Transcription Factor Family AT5G48150 58.2 1.4e-171 599.7
Hepe04g1711 . 16 549 GRAS Transcription Factor Family AT5G48150 51.5 1.2e-146 516.9
Hepe10g1981 . 182 573 GRAS Transcription Factor Family AT5G48150 53.8 1.5e-120 430.3
Hepe10g1983 . 1 144 GRAS Transcription Factor Family AT5G48150 53.5 1.7e-44 177.6
Hepe02g2646 . 44 571 GRAS Transcription Factor Family AT2G01570 70.0 2.1e-214 742.3
Hepe02g2393 . 56 575 GRAS Transcription Factor Family AT2G01570 62.5 3.0e-181 632.1
Hepe02g0993 . 28 544 GRAS Transcription Factor Family AT2G01570 60.0 7.0e-170 594.3
Hepe02g2393 . 54 578 GRAS Transcription Factor Family AT1G66350 62.5 2.0e-176 615.9
Hepe02g2646 . 42 572 GRAS Transcription Factor Family AT1G66350 59.6 2.5e-171 599.0
Hepe02g0993 . 1 548 GRAS Transcription Factor Family AT1G66350 57.4 7.4e-168 587.4
Hepe02g2393 . 56 575 GRAS Transcription Factor Family AT3G03450 61.8 4.4e-174 608.2
Hepe02g2646 . 44 571 GRAS Transcription Factor Family AT3G03450 60.0 1.6e-171 599.7
Hepe02g0993 . 28 544 GRAS Transcription Factor Family AT3G03450 60.6 3.7e-165 578.6
Hepe02g2393 . 55 576 GRAS Transcription Factor Family AT5G17490 59.0 5.3e-161 564.7
Hepe02g2646 . 40 571 GRAS Transcription Factor Family AT5G17490 57.6 1.2e-157 553.5
Hepe02g0993 . 29 550 GRAS Transcription Factor Family AT5G17490 55.6 1.7e-146 516.5
Hepe10g1981 . 1 573 GRAS Transcription Factor Family AT1G21450 57.3 7.5e-172 600.9
Hepe06g0540 . 170 545 GRAS Transcription Factor Family AT1G21450 53.8 3.8e-115 412.5
Hepe10g1983 . 1 144 GRAS Transcription Factor Family AT1G21450 73.8 3.0e-59 226.9
Hepe05g0168 . 301 749 GRAS Transcription Factor Family AT5G59450 50.4 5.1e-123 438.7
Hepe04g1711 . 56 549 GRAS Transcription Factor Family AT4G17230 61.4 2.0e-168 589.3
Hepe06g0540 . 50 545 GRAS Transcription Factor Family AT4G17230 51.7 1.7e-135 479.9
Hepe01g1320 . 209 583 GRAS Transcription Factor Family AT4G17230 51.5 1.1e-108 391.0
Hepe08g0397 . 134 545 GRAS Transcription Factor Family AT2G04890 67.6 1.9e-161 565.8
Hepe06g0540 . 171 545 GRAS Transcription Factor Family AT2G04890 64.5 6.7e-143 504.2
Hepe01g1320 . 213 583 GRAS Transcription Factor Family AT2G04890 59.6 2.0e-126 449.5
Hepe04g1711 . 169 549 GRAS Transcription Factor Family AT2G04890 58.0 3.8e-122 435.3
Hepe09g1143 . 1 472 GRAS Transcription Factor Family AT1G50420 65.8 2.8e-177 618.6
Hepe01g1006 . 1 462 GRAS Transcription Factor Family AT1G50420 60.8 1.2e-156 550.1
Hepe06g1136 . 432 795 GRAS Transcription Factor Family AT4G00150 55.7 7.5e-105 378.3
Hepe07g0671 . 1 587 GRAS Transcription Factor Family AT3G50650 57.3 3.9e-151 531.9
Hepe04g0646 . 180 833 GRAS Transcription Factor Family AT3G54220 62.5 4.4e-205 711.4
Hepe07g0886 . 82 447 GRAS Transcription Factor Family AT3G54220 62.8 3.1e-134 476.1
Hepe04g1315 . 74 499 GRAS Transcription Factor Family AT4G37650 65.3 1.8e-161 566.2
Hepe10g1414 . 143 531 GRAS Transcription Factor Family AT4G37650 58.4 2.8e-133 472.6
Hepe03g1077 . 65 459 GRAS Transcription Factor Family AT4G37650 51.2 8.1e-117 417.9
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56570 PF03514 GRAS 1.30E-131 CL0063 Hepe TF