Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1981 ATGTCGTTAGTCGGGCCGTCCGATCCATCTCCGTTATCATACGGAAGTCGCAAGCTTTACTCATTGAAGGGAACCAAGAATGCTCCTGACTTGTCCACACAAAGATTTGGCTCCGAAAAGCACAGGACGATGTATATGAATGATTCAGATTGCAGTGAGAGCTATGAGAAGTATTTCCTCGATTTCCCGATTGAAGAGTTATCAATATCTGGCATTTCGACCAATTCTTTTCACCCCAACGCTGCCTTGTATGGGCTAAGGGCTGATTCTTTATCCCCTTTGTGTGATTCGTTTAATATTTTTGATGCTTATCAATCAAACTCAGACTCGGCTTGCCTTGAGAGTCCAGAACAGCTGGATTTTGAGGATGATCAAGTGAGACAGAAGTTGCAGGAATTGGAGAGAGATCTGATGGGAGAACCCGATGCTGCTGATTATGAGGACGAGATGTTTGCAAATGGCCAGAGCATGGAAATTGACAGCGAATGGGCAAATTCAATTCAAGATGCACTCCTTCATGACTCGCCAAAGGAATCGTCCTCGACAGATTCTAATTGTAGTACCATCAGCAGCAATAAGGATGCATCTCAGATATCTTCACAGAATCCCAGACAAATGCTTTTAGAATGTGCTTCTGCTATCTCAGAAGAGAACTTTGGAGAAGCATCAGCCATGATAGAACAGCTCCGAGGTATGGTATCAGTTCAGGGAGATCCCTCACAGAGGATTGCGGCTTATATGGTGGAAGGTCTTGCTGCCCGGTTATTGGAATCGGGAAAATGTCTTTATAAAGCTTTGAGATGCAAAGAACCTCCTTCCTCCGACCGTCTCGCAGCTATGCAGATCCTTTTTGAGGTCTGCCCCTGTTTCAAATTCGGCTTTGTGGCTGCAAATTGTGCCATTATCGAGGCAGCGAAAGATGAGAAGAGAATTCACATAATCGATTTCGATGTAAGCCAAGGAACTCAGTACATAAAATTGATTCAGATGCTAGCTGCTCAGCCAGGTAAGCCACCACACTTGAGGTTAACTGGTGTTGATGACCATGAATCGGTTCAGCGCCCCGTTGGAGGTCTTAGACACATTGGACAAAGACTTGAGCAACTGGCCAAAGCGCTGCGGGTTCCTTTTGAATTTCACGCGATTGCCTCAAATGCTTCAGATGTCACTCCCTCAATGCTCGCCTCCCGACCCGGAGAAGCACTCATAGTTAACTTTGCTTTTCTGCTTCACCACATGCCAGATGAAAGCGTTTCAACCGTAAATCTACGAGACAGGCTTCTCCGAATGGTCAAGAGCCTGAACCCGAAACTCGTAACAGTCGTCGAACAGGACATGAACACAAACACCACCCCATTCTTCTCAAGATTCGTTGAAGCCTATAACTACTACGCCGCTGTTTACGATTCTCTGGATGCAACCCTCCCAAGAGACAGTCAAGACAGAATAAATGTAGAAAGGCAGTGCTTGGCAAAGGACATAGTCAACATTGTAGCTTGTGAAGGTGAAGAAAGAGTAGAGAGATACGAAGTCGCCGGGAAATGGCGGGCAAGAATGACGATGGCTGGGTTCACTTCTTGTTCGATGAGCCAAAATGTGACCGACCCGATTCGCAAAATTATCGAGGAGTATTGTGACAGATTCAAGATGTATGAGGAAATGGGGACACTTCATTTTGGATGGGAAGAGAAAAGCTTGATTGTTACTTCAGCATGGAGGTAA 1722 45.59 MSLVGPSDPSPLSYGSRKLYSLKGTKNAPDLSTQRFGSEKHRTMYMNDSDCSESYEKYFLDFPIEELSISGISTNSFHPNAALYGLRADSLSPLCDSFNIFDAYQSNSDSACLESPEQLDFEDDQVRQKLQELERDLMGEPDAADYEDEMFANGQSMEIDSEWANSIQDALLHDSPKESSSTDSNCSTISSNKDASQISSQNPRQMLLECASAISEENFGEASAMIEQLRGMVSVQGDPSQRIAAYMVEGLAARLLESGKCLYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFVAANCAIIEAAKDEKRIHIIDFDVSQGTQYIKLIQMLAAQPGKPPHLRLTGVDDHESVQRPVGGLRHIGQRLEQLAKALRVPFEFHAIASNASDVTPSMLASRPGEALIVNFAFLLHHMPDESVSTVNLRDRLLRMVKSLNPKLVTVVEQDMNTNTTPFFSRFVEAYNYYAAVYDSLDATLPRDSQDRINVERQCLAKDIVNIVACEGEERVERYEVAGKWRARMTMAGFTSCSMSQNVTDPIRKIIEEYCDRFKMYEEMGTLHFGWEEKSLIVTSAWR 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 56869049 56872116 + Hsped.10g19810.1 Hepe10g1981 582528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1981 573 ProSiteProfiles GRAS family profile. 194 573 IPR005202 -
Hepe10g1981 573 MobiDBLite consensus disorder prediction 174 201 - -
Hepe10g1981 573 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 187 572 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Hepe10g1981 573 Pfam GRAS domain family 204 573 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1503 Hepe-Chr4:70630850 Hepe10g1981 Hepe-Chr10:56869049 2.98e-52 dispersed
Hepe06g0670 Hepe-Chr6:50468948 Hepe10g1981 Hepe-Chr10:56869049 6.81e-78 dispersed
Hepe07g0671 Hepe-Chr7:7768584 Hepe10g1981 Hepe-Chr10:56869049 1.70e-50 dispersed
Hepe08g0397 Hepe-Chr8:3565298 Hepe10g1981 Hepe-Chr10:56869049 2.71e-143 dispersed
Hepe08g0779 Hepe-Chr8:6977131 Hepe10g1981 Hepe-Chr10:56869049 1.33e-58 dispersed
Hepe10g1249 Hepe-Chr10:47888628 Hepe10g1981 Hepe-Chr10:56869049 3.85e-61 dispersed
Hepe10g1981 Hepe-Chr10:56869049 Hepe10g1983 Hepe-Chr10:56886243 2.37e-99 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56570 PF03514 GRAS 1.30E-131 CL0063 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1981 K27748 - csv:101206511 1043.88