Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe10g1983 ATGGTCAAGAGCCTGAACCCGAAACTCGTAACAGTCGTCGAACAGGACATGAACACAAACACCACCCCATTCTTCTCAAGATTCGTTGAAGCCTATAACTACTACGCCGCTGTTTACGATTCTCTGGATGCAACCCTCCCAAGAGACAGTCAAGACAGAATAAATGTAGAAAGGCAGTGCTTGGCAAAGGACATAGTCAACATTGTAGCTTGTGAAGGTGAAGAAAGAGTAGAGAGATACGAAGTCGCCGGGAAATGGCGGGCAAGAATGACGATGGCTGGGTTCACTTCTTGTTCGATGAGCCAAAATGTGACCGACCCGATTCGCAAAATTATCGAGGAGTATTGTGACAGATTCAAGATGTATGAGGAAATGGGGACACTTCATTTTGGATGGGAAGAGAAAAGCTTGATTGTTACTTCAGCATGGAGGTAA 435 45.29 MVKSLNPKLVTVVEQDMNTNTTPFFSRFVEAYNYYAAVYDSLDATLPRDSQDRINVERQCLAKDIVNIVACEGEERVERYEVAGKWRARMTMAGFTSCSMSQNVTDPIRKIIEEYCDRFKMYEEMGTLHFGWEEKSLIVTSAWR 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 56886243 56886677 + Hsped.10g19830.1 Hepe10g1983 582530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe10g1983 144 ProSiteProfiles GRAS family profile. 1 144 IPR005202 -
Hepe10g1983 144 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 143 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Hepe10g1983 144 Pfam GRAS domain family 1 144 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g1981 Hepe-Chr10:56869049 Hepe10g1983 Hepe-Chr10:56886243 2.37e-99 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56571 PF03514 GRAS 9.90E-51 CL0063 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe10g1983 K27748 - csv:101206511 291.967