Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0003 ATGGTCTTCAGAGGCAGGTTTTTCTCGTCCTCCAAGAAGTCCGATTCTTCCAGCCCCGACGGATCCAGTCCCCGCTTCCTTGGGTCTAACTCACCCATCAGATCCGACAAGAAGAAGAGCAAATCAGCCGCCAAAGATGAACCCCATATTTCTAATTCTACCAGCAGCAGCAGCTTCAGAAGTACCGTTCTGAAAGATGCTTCCCGGAGCAAGGATTGGAAACGGAAAGACAGTCAAGCTCAAATGCCGATCGAGACGCCGTCGAAGTCTGAACCAATATCCGGCTTGAACTTGGGTCCGAAGGCCAAGAAGTCGACTGATGTGAAGGACGTGGCCGCGTCGGTTTCACCTATTCTGGCGTCATCCCTTGGACTGAATAGGATAAAGACAAGATCAGGCCCGTTGCCACAGGAGAGCTTTTTGGGTTTCAAAGGTGATAAGAGCTCCCTGGGTTCGAGCAATCTTTCCAGGAACTGTGGCGACGGAAGCTCAGGTTCAAATTCAGGTTCAACATGGTCGGGGACTTCTAGTGGGGGGAAGAAAGAGGCGGCGAGTCAGAAAAGATTAGGTTTTCAGGACAATGTTAAAAGTTATATTCACAATACTAGCAATTCCGACAATATGCCAATTGGTAATGCACCATCTACTGAACAGAGTTCAAATTTGTTAGGACAGCCTCGGTTACAGAATGTTGAGTCATCCAATGAAGCTGGTATTGTTTGCTGTTCCTTGTTCCAATGCCTCTTGGATCATTCTTCTTCCGCTAAGGAGTCAATCTTTTCCTTGATATGGAAGGTGAATTGGGGAAAATTTGCAATCTGTGGCATAAATGTTCAGGAAAACGAGGTGGCTCTTATGGCTGAAAAGTTGAATTGTAAGGTGGAAAATCTTCCTTTTAATTACCTTGGACTACCCCTTGGAGGAGCCTTGAAGCATCAAAATGAAGCTTTGTTAGGAAAATGGAGTTGGAGATTTACGGTTGAACCTCATTCTTTTTGGGGAAAAGTAGTTAAAAGTATTCATGGTTGTTCTATCAACGATTGGCACACTGCTGGACGATATGAATCAACATGGGGATGTTCTGAAGGATTAAGAAATTTAGATTTTTGTACGCCAGAGTCTTCTTATGATTGTGAAAATCCAAAGGAGTCTGAATCTCCCCGCTTTCAAGCCATCCTCCGAGTCACAAGTGCTCCTCGAAGGAAATATCCAGCTGATATCAAAAGTTTTTCCCATGAACTAAATTCAAAAGGTGTACGACCTTTCCCACTTTGGAAGTCACGCCGTTTAAATAATTTAGAGGAGATCTTAGTTATGATACGAGCAAAATTTGACAAGGCAAAAGAAGAAGTAAATTCTGATCTGGCTATTTTTGCTGCTGATCTGGTTGGAATTCTTGAAAAAAATGTCGATACTCATCCAGAGTGGCAAGAGACGATTGAAGACTTGTTGGTTTTAGCTCGAAGCTGTGCCATTTCATCTCCAGGTGAATTTTGGCTTCAGTGTGAAAGCATCGTTCAGGATTTGGATGATAGACGCCAAGAACTTCCTCCAGGCATGCTGAAACAGCTTCATACTCGAATGCTGTTCATTCTCACTAGATGTACCAGGTTACTGCAGTTCCATAAAGAAAGTGGGTTAGCTGAAGATGAAAATGTTTTTCAGCTTCGTCAGTCGAGAAATCTGCATTCTGCTGATAAACGCATTCCTCCAACTATGGGAAGGGAAATGAAAAGTTCTTTTGCAGCCAAGGCTTCTAAGCCAGCTTCATCCAGGAAATCTTACAGCCAGGAGCAGCGTGGCTTGGATTGGAGCAGAGAACATGATATAGTGCCCGGGGATAATGTCTCAACATCTCCCGATGATACTTCAAAGAACTTGGTATCTCCTACTGGTAGAGACCGGATGGCTTCTTGGAAAAGATTGCCTTCTCCAGCAGCAAAAAGTGTGAAAGAACCTACTTTGAAGGATCAGGGTGATAATAAGAAGTTCAAATCTTTGAACATGCCAAAAATCAGTACTGGTGTTTCTGAAACTGATTTGGCTACTGCTAAGGTTTCTGAGCTTCCTTTGCCCAGAGATTCCCATGACCAGCCTACCAAGCACCAACATAAACCTTCTTGGGGTTGGGGTGATCAACCAACTGTATCTGATGAGAGTTCAATAATTTGTCGCATTTGTGAAGAAGAGATTCCTACTGCAAATGTGGAAGACCATTCAAGAATTTGTGCAGTTGCTGATCGATGTGATCAAAAGGGTATAAGTGTTAATGAACGCTTACTCAGAATTGCTGAAACTCTCGAGAAGATGATCGAGTCCTTTACTCAAAAGGATTCTCAACATGTTGGAAGTCCAGATGTTGCAAAAGTTTCAAATTCTAGCGTGACTGAAGAATCTGATATTTCCCCAAAACATAGTGATTGGTCCCGCAGGGGCTCAGAAGACATGCTCGATTGCTTCCATGAAACTGAAAATTCTGTTTTTATGGATGACTTAAAAGGTTTACCTTCCATGTCTTGTAAAACTCGTTTTGGTCCAAAGTCTGATCAGGGTATGACAACATCATCGGCCGGTAGCATGACTCCTAGATCTCCTTTATTAACACCAAGAACTAGTCAATTTGACTTGTTTTTGGCAGGGAAGGGTGCTTACTATGAACATGATGATCTTACACAGATCAATGATCTTGCAGATATTGCACGCTGTTCAGCAAATACACCTCTGGGTGATGATTGCTCGATGCAATATTTGTTAACATGCCTTGAAGACTTGAGAGTTGTCATTAACCGCAGGAAGTTCAATGCACTGACAGTTGACACTTTTGGCACTCGTATTGAAAAGTTAATCCGGGAGAAGTATTTGCAGCTTTGTGAGCTGGTAGATGATGAAAAGATTGACATAACAAGCACAGTTATCGATGAAGATACTCCTCTTGAAGATGACGTTGTTCGTAGTTTAAGAACAAGTCCCATCCATTCTTCAAAGGACCGTACATCAATTGATGACTTTGAGATTATAAAACCAATTAGCCGTGGGGCATTTGGTCGGGTTTTCCTGGCTAAAAAGAGGACAACGGGGGACCTTTTTGCCATAAAGGTTTTGAAGAAAGCTGATATGATTCGGAAGAATGCCGTTGAAAGTATTTTGGCAGAACGTAATATTTTAATTTCTGTGCGCAACCCTTTTGTGGTTCGCTTCTTCTACTCTTTTACTTGCCGTGAAAATTTGTATCTTGTGATGGAGTATTTGAATGGAGGAGATCTTTACTCCTTGTTGAGAAATTTAGGCTGCCTAGATGAAGAGGTTGCTCGTGTATATATCGCTGAAGTTGTTCTTGCTTTAGAGTATTTGCATTCACTTGAGGTAGTTCATCGGGACTTAAAGCCTGATAATCTATTAATAGCACACGATGGTCATATTAAGTTGACAGATTTTGGGCTTTCCAAGGTTGGTCTTATCAACAGTACTGATGATTTATCTGGACCTGCTGTTAGCGGGACAACTCTTCTCGGGTATGATGAGCCTACAATTTCTGCTTCAGAGCATCAACAAGAAAGACGAAAAAAGCGTTCTGCTGTTGGCACACCAGACTATTTGGCACCAGAGATACTATTGGGAACTGGACATGGCGCCACAGCTGACTGGTGGTCAGTTGGGATCATTTTATTTGAACTAATTGTTGGCATTCCACCCTTCAATGCCGAGCATCCCCAGACTATATTTGATAACATTCTCAATCGTAAGATCCCTTGGCCTCAGATACCTGAAGAGATGAGCCATGATGCTCAAGATTTAATTGATCGATTATTGACTGAAGATCCTCACCAGCGACTTGGAGCTATCGGCGCATCTGAGGTGAAGAGGCATATGTTCTTTAAAGATATTAACTGGGACACGCTTGCCCGACAAAAGGCTGCATTTGTTCCAACATCTGAAAGTGCTCTTGATACTAGTTATTTTACAAGTCGCTACTCATGGAATCATTCAGATGATCATGTCTATCCACCCAGTGAACTTGAGGATTCGAGTGATGCTGACAGCTTAAGTGGTAACAGTAGTTTGAGCAATCGTCAAGACGAAGTGGGAGATGAATGTGGGGGCCTTACAGATTTTGAGCCTGGTTCTTCTGTCAATTACTCATTCAGTAATTTCTCTTTCAAGAATCTCTCCCAGCTTGCATCCATCAACTATGACCTGCTTTCTAAGGGTTTGAAGGATGATCCTCCCAGTCATGATGCTTAA 4242 42.62 MVFRGRFFSSSKKSDSSSPDGSSPRFLGSNSPIRSDKKKSKSAAKDEPHISNSTSSSSFRSTVLKDASRSKDWKRKDSQAQMPIETPSKSEPISGLNLGPKAKKSTDVKDVAASVSPILASSLGLNRIKTRSGPLPQESFLGFKGDKSSLGSSNLSRNCGDGSSGSNSGSTWSGTSSGGKKEAASQKRLGFQDNVKSYIHNTSNSDNMPIGNAPSTEQSSNLLGQPRLQNVESSNEAGIVCCSLFQCLLDHSSSAKESIFSLIWKVNWGKFAICGINVQENEVALMAEKLNCKVENLPFNYLGLPLGGALKHQNEALLGKWSWRFTVEPHSFWGKVVKSIHGCSINDWHTAGRYESTWGCSEGLRNLDFCTPESSYDCENPKESESPRFQAILRVTSAPRRKYPADIKSFSHELNSKGVRPFPLWKSRRLNNLEEILVMIRAKFDKAKEEVNSDLAIFAADLVGILEKNVDTHPEWQETIEDLLVLARSCAISSPGEFWLQCESIVQDLDDRRQELPPGMLKQLHTRMLFILTRCTRLLQFHKESGLAEDENVFQLRQSRNLHSADKRIPPTMGREMKSSFAAKASKPASSRKSYSQEQRGLDWSREHDIVPGDNVSTSPDDTSKNLVSPTGRDRMASWKRLPSPAAKSVKEPTLKDQGDNKKFKSLNMPKISTGVSETDLATAKVSELPLPRDSHDQPTKHQHKPSWGWGDQPTVSDESSIICRICEEEIPTANVEDHSRICAVADRCDQKGISVNERLLRIAETLEKMIESFTQKDSQHVGSPDVAKVSNSSVTEESDISPKHSDWSRRGSEDMLDCFHETENSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTPRSPLLTPRTSQFDLFLAGKGAYYEHDDLTQINDLADIARCSANTPLGDDCSMQYLLTCLEDLRVVINRRKFNALTVDTFGTRIEKLIREKYLQLCELVDDEKIDITSTVIDEDTPLEDDVVRSLRTSPIHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLEVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGTTLLGYDEPTISASEHQQERRKKRSAVGTPDYLAPEILLGTGHGATADWWSVGIILFELIVGIPPFNAEHPQTIFDNILNRKIPWPQIPEEMSHDAQDLIDRLLTEDPHQRLGAIGASEVKRHMFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSWNHSDDHVYPPSELEDSSDADSLSGNSSLSNRQDEVGDECGGLTDFEPGSSVNYSFSNFSFKNLSQLASINYDLLSKGLKDDPPSHDA 1413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 37896 88625 - Lag0024048.1 Lac10g0003 582534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0003 1413 MobiDBLite consensus disorder prediction 202 221 - -
Lac10g0003 1413 MobiDBLite consensus disorder prediction 1334 1369 - -
Lac10g0003 1413 Gene3D Transferase(Phosphotransferase) domain 1 1087 1310 - -
Lac10g0003 1413 Pfam Protein kinase domain 1004 1292 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0003 1413 SUPERFAMILY Protein kinase-like (PK-like) 1000 1339 IPR011009 -
Lac10g0003 1413 MobiDBLite consensus disorder prediction 65 79 - -
Lac10g0003 1413 PANTHER SERINE/THREONINE-PROTEIN KINASE 706 1388 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Lac10g0003 1413 MobiDBLite consensus disorder prediction 1 110 - -
Lac10g0003 1413 ProSiteProfiles AGC-kinase C-terminal domain profile. 1293 1396 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0003 1413 MobiDBLite consensus disorder prediction 128 187 - -
Lac10g0003 1413 MobiDBLite consensus disorder prediction 32 46 - -
Lac10g0003 1413 Gene3D Phosphorylase Kinase; domain 1 1001 1321 - -
Lac10g0003 1413 MobiDBLite consensus disorder prediction 775 809 - -
Lac10g0003 1413 ProSiteProfiles Protein kinase domain profile. 1003 1292 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0003 1413 MobiDBLite consensus disorder prediction 47 64 - -
Lac10g0003 1413 MobiDBLite consensus disorder prediction 776 799 - -
Lac10g0003 1413 MobiDBLite consensus disorder prediction 667 681 - -
Lac10g0003 1413 CDD STKc_MAST_like 1009 1297 - -
Lac10g0003 1413 MobiDBLite consensus disorder prediction 146 182 - -
Lac10g0003 1413 MobiDBLite consensus disorder prediction 9 30 - -
Lac10g0003 1413 FunFam probable serine/threonine protein kinase IREH1 1001 1090 - -
Lac10g0003 1413 MobiDBLite consensus disorder prediction 584 598 - -
Lac10g0003 1413 Coils Coil 757 777 - -
Lac10g0003 1413 MobiDBLite consensus disorder prediction 562 714 - -
Lac10g0003 1413 MobiDBLite consensus disorder prediction 616 631 - -
Lac10g0003 1413 MobiDBLite consensus disorder prediction 843 865 - -
Lac10g0003 1413 Coils Coil 430 450 - -
Lac10g0003 1413 SMART serkin_6 1003 1292 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0003 1413 MobiDBLite consensus disorder prediction 1342 1359 - -
Lac10g0003 1413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1122 1134 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0003 Lac-Chr10:37896 Lac12g2162 Lac-Chr12:38708462 3.60E-72 dispersed
Lac11g1570 Lac-Chr11:27323402 Lac10g0003 Lac-Chr10:37896 9.10E-10 dispersed
Lac10g0003 Lac-Chr10:37896 Lac11g1572 Lac-Chr11:27336246 1.10E-254 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85608 PF00069 Pkinase 9.10E-65 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0003 K08789 - csv:101214945 2001.1