Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0015 ATGATAGCCAATACTGCCTCGCCGACTCTTCCTTCTTCGGAACCTTATTCTTGCTTAGAAAATGGAAACAACAACAACAACAACAAGAGGAAGAGAAGGCCTGCCGGCACCCCAGATCCGGACGCAGAGGTGGTGTCTCTGTCCCCAAAAACACTGCTAGAATCGGACCGGTACGTGTGTGAGATCTGCAACCAGGGGTTCCAGCGGGACCAGAACCTACAGATGCACAGGCGGCGGCATAAGGTCCCTTGGAAGCTGCTGAAGAGGGAGACTCCTGTTGTGCGGAAGAGGGTTTTCGTTTGCCCTGAGCCCACCTGCCTGCACCACGACCCTTGCCACGCCCTCGGCGACCTCGTTGGCATCAAGAAGCACTTCCGAAGGAAGCACAGCAACCACAAGCAGTGGGTCTGTGAGAAATGCTCCAAGGGCTACGCCGTTCAGTCCGATTACAAGGCCCATCTCAAAACCTGTGGCACCCGAGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCTAGGGTGGAGAGCTTCATAGAGCACCAAGATGCTTGCAATATGGGGCATCTCCGGCAGGAATCCCAAACCCTCCAGCCCGCATGTTTGTCCCGAACGGCTTCCAGTCCAAGCCCATCCAGCGATACCAACTTCAGCAGCGCGCCCAATTGGCCTGCTCTCATAGCGCCACCCACTTTAAAGCCTTTGGACGCCATATTCTTAGCCCCTACTACGGACGACTCCAACAACAATAACAATAATGGTGCACCATACGATCACAGCTTAGACCTCAAACTCTCAACTGCATCAAATGGCATCGGCGTTTCCTCGAAGAGAGAAGGGGGTAATAAAGGTTCTTCGACCACCCAACTCCAGCTTTCGATCGGATCGTGTGATTTTGGGGATATGAAAAACATGAGAGGAGATGAGGAAAAGGTGAAAATGATGAGGTTGGATGAGAATAAAGGTGGGGCGGGGGATGTTAGAGTTAGAGAAGAAGCGCGGGAGCAGCTAAGGGTGGCGATGGCGGAGAAGGCGTACGCAGAGGAAGCAAGGCAACAAGCAAAGCGCCAAATCGAAATGGCAGAGCAAGAATTCGCGAATGCAAAGAGGATGAGGCAACAGGCGCAGGCGGAGTTGGATAAGGCTACAGCTCTTAAACAGGCAGCAATCAAACAGATCAATTCAACCATTCTTGAAATCACTTGTCAAGCTTGCCAGAAGCGATTTCAAGCCAAAACAACAACAACAACAACAATTGCACCCGCGGATCATGACAATTCCCTGGCATTCAGTTATGTCTCCTCCGTCATTACAACCGAAGGTGAAGTAGAGAAAGATCAATCAACCCTTATACCTAAACCGCCCAACAATTAA 1368 51.61 MIANTASPTLPSSEPYSCLENGNNNNNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQESQTLQPACLSRTASSPSPSSDTNFSSAPNWPALIAPPTLKPLDAIFLAPTTDDSNNNNNNGAPYDHSLDLKLSTASNGIGVSSKREGGNKGSSTTQLQLSIGSCDFGDMKNMRGDEEKVKMMRLDENKGGAGDVRVREEAREQLRVAMAEKAYAEEARQQAKRQIEMAEQEFANAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQACQKRFQAKTTTTTTIAPADHDNSLAFSYVSSVITTEGEVEKDQSTLIPKPPNN 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 237786 239849 - Lag0024060.1 Lac10g0015 582546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0015 455 SMART c2h2final6 135 162 IPR013087 -
Lac10g0015 455 SMART c2h2final6 58 80 IPR013087 -
Lac10g0015 455 SMART c2h2final6 99 129 IPR013087 -
Lac10g0015 455 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 398 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac10g0015 455 MobiDBLite consensus disorder prediction 1 31 - -
Lac10g0015 455 Coils Coil 328 390 - -
Lac10g0015 455 Gene3D Classic Zinc Finger 114 184 - -
Lac10g0015 455 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 95 129 - -
Lac10g0015 455 MobiDBLite consensus disorder prediction 198 220 - -
Lac10g0015 455 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Lac10g0015 455 SUPERFAMILY beta-beta-alpha zinc fingers 55 81 IPR036236 -
Lac10g0015 455 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 162 196 - -
Lac10g0015 455 CDD ATP-synt_Fo_b 326 405 - -
Lac10g0015 455 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Lac10g0015 455 MobiDBLite consensus disorder prediction 1 45 - -
Lac10g0015 455 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Lac10g0015 455 Gene3D Classic Zinc Finger 36 98 - -
Lac10g0015 455 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 134 158 - -
Lac10g0015 455 FunFam protein indeterminate-domain 12-like 37 105 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0015 Lac-Chr10:237786 Lac10g0312 Lac-Chr10:2411785 6.70E-105 dispersed
Lac10g0015 Lac-Chr10:237786 Lac1g2114 Lac-Chr1:42624689 3.30E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22685 PF00096 zf-C2H2 0.0043 CL0361 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0015 K25871 - csv:101209426 702.975