Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0021 ATGGTTTTGACGACAGTTGCAGACTCGGGTGATTCTGTGAACTGCACTTTTGGTTCCAGATATGTCCGCTCTCCTCCTCCCAAGTTCAAACTGGGGGAGAAATCTATTCCCAAGGATGCAGCGTACCAGATCATCCACGATGAGTTGATGCTGGACGGGACACCGAGGCTGAACTTGGCCTCTTTTGTTACCACGTGGATGGAGCCTGAGTGTGATAACCTCATCATGGCTTCTCTCAACAAGAACTATGTTGACATGGATGAGTACCCTGTCACCACTGAGCTCCAGAATCGATGTGTGAATATGATAGCTCGCCTGTTTCATGCCCCCATCGGAGAAGAAGAAGTTGCAGTTGGTGTGGGGACTGTGGGATCATCAGAGGCTATAATGCTGGCGGGCCTTGCTTTTAAGAGGACATGGCAGCACAAAAGAAAATCTCAAGGCAAACCTTATGATAAGCCCAACATAGTCACTGGAGCTAATGTGCAGGTGTGCTGGGAGAAGTTTGCTAGGTACTTTGAGGTTGAGCTAAAGGAGGTGAAGCTTTCTGAAGGATTTTATGTCATGGATCCTGTGAAGGCTGTCGAACTCGTGGATGAGAATACCATTTGTGTTGCAGCAATTTTGGGATCCACTCTGACTGGAGAGTTTGAGGATGTAAAACTCCTTAATGAACTCCTCTCTAAGAAGAATAAGGAAACAGGTTGGGACACCCCAATTCATGTTGATGCAGCCAGTGGAGGGTTTATAGCGCCGTTCCTTTATCCTGATCTGGAGTGGGATTTTCGGTTGCCTTTAGTGAAGAGCATCAATGTGAGTGGCCACAAGTATGGCCTTGTTTACCCTGGTGTAGGATGGGTTGTTTGGAGGAGTAAAGAGGATCTTCCTGACGAGCTTGTGTTCCACATTAACTATCTTGGTTCTGATCAACCCACCTTCACTCTTAACTTCTCAAAAGGTTCTAGTCAAATCATCGCCCAGTATTATCAATTTATACGGCTTGGCTTCGAGGGATACAAAAACGTGATGGAGAACTGCAAGGAGAATGCGAGAGTGCTGAGAGAGGGAATAGAGAAGATGGGAAGGTTTGAGGTTGTTTCCAAGGATGTTGGAGTGCCCCTGGTGGCCTTCACTCTCAAAGATAGCAGCAAGCACACCGTGTTCGAGATATCAGAGAACTTGAGGAGGTTTGGATGGATCGTGCCAGCTTACACGATGCCTCCGAATGCTCAGCACATCGCGGTGCTGCGAGTGGTGATCAGGGAGGACTTCAGCCGGAGTTTGGCCGAGAGACTGATCTCGGACATCGAGAAAGTCGTAGAGGAAGTCGACTCGCTGCCAATTCGGGTGGCTGTGAAAGCAGCAGAAGTGAAAGCTGGTGTTGAAGATGGTGGGAGAGTTACAAAGCATGTGAAGAAGAGTGATCGGGAGATTGAGGAGGAAATAACTACATATTGGAGGAGGCTTGTAGATGGCAAGAAAACTGGTGCCTGCTAG 1497 48.03 MVLTTVADSGDSVNCTFGSRYVRSPPPKFKLGEKSIPKDAAYQIIHDELMLDGTPRLNLASFVTTWMEPECDNLIMASLNKNYVDMDEYPVTTELQNRCVNMIARLFHAPIGEEEVAVGVGTVGSSEAIMLAGLAFKRTWQHKRKSQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGFYVMDPVKAVELVDENTICVAAILGSTLTGEFEDVKLLNELLSKKNKETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKEDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCKENARVLREGIEKMGRFEVVSKDVGVPLVAFTLKDSSKHTVFEISENLRRFGWIVPAYTMPPNAQHIAVLRVVIREDFSRSLAERLISDIEKVVEEVDSLPIRVAVKAAEVKAGVEDGGRVTKHVKKSDREIEEEITTYWRRLVDGKKTGAC 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 292189 294757 - Lag0024066.1 Lac10g0021 582552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0021 498 NCBIfam glutamate decarboxylase 16 443 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Lac10g0021 498 Gene3D - 65 359 IPR015421 -
Lac10g0021 498 Pfam Pyridoxal-dependent decarboxylase conserved domain 37 380 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Lac10g0021 498 SUPERFAMILY PLP-dependent transferases 15 443 IPR015424 -
Lac10g0021 498 PANTHER GLUTAMATE DECARBOXYLASE 1 494 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Lac10g0021 498 CDD DOPA_deC_like 58 438 - -
Lac10g0021 498 Gene3D - 1 64 - -
Lac10g0021 498 FunFam Glutamate decarboxylase 65 359 - -
Lac10g0021 498 FunFam Glutamate decarboxylase 5 64 - -
Lac10g0021 498 FunFam Glutamate decarboxylase 360 447 - -
Lac10g0021 498 Gene3D - 360 447 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0021 Lac-Chr10:292189 Lac8g1978 Lac-Chr8:38193435 1.40E-228 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0021 K01580 - csv:101210903 936.791