Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0023 ATGGAGTTTGGCAGTGGAGGCGGTGGCTCCGGTTGGGACAACGATTCCTCCTCCGACCCTCAACGCAGGAAAAAACGCTACCACCGTCACACTGCCAACCAGATTCAGAGGCTCGAGGCAATGTTCAAAGAGTGCCCACACCCGGATGAGAAGCAGAGATTACAGTTAAGCAGAGAGCTGGGATTGGCTCCTCGCCAAATCAAATTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGCTCAACATGAAAGGGCAGATAATAGTGCACTTCGGGCAGAGAACGACAAGATTCGATGTGAGAACATAGCCATCAGAGAGGCACTCAAAAATGTCATCTGCCCCTCCTGCGGTGGCCCTCCCCTTCAGGACCCCTACTTCGACGAGCACAAACTGCGAATCGAAAACGCCCATTTGAAAGAAGAGCTTGATAGAGTATCCAGCATTGCGGCCAAGTACATTGGGAGGCCAATCTCTCAACTTCCACCCATTCAGCCTTCTCATTTTTCCTCATTGGAATTATCCATGGGGAGTTTTCCCTCCCAAGAAATGGCTTGCCCTTCTCTTGATCTTGATTTACTTCCTGCAACTTCTTCTAGTGTTCCCAGTTTGCCATACCACCAACCAATTCACCTCTCCAACGTGGATAAGTCCCTCATGACTGAAATTGCCACAAATGCCATGGGAGAGCTGCTAAGGCTTTCCCAAGCTAATGAACCATTCTGGATGAAATCACCAAGCGACGGACGTGATGTTCTCGACCTCGAAACCTATGAACAGGCTTTTCCAAGAGCTAATACTCCCTTGAAGAATCTCCATTTTCGCACTGAAGCATCTAGAGATTCAGGCGTGGTGATCATGAATAGTGCAGCATTGGTTGACATGTTTATGGATTCTACCAAATGGACAGAGTTATTTCCCACAGTGGTCTCGATTGCAAGAACAATTGAAGTTATATCATCCGGAATGTTGGGAAGTCATAATGGCTCCTTGCAACTGATGTACCTAGAATTGCAGCTACCCTCCCCATTGGTTCCGACTCGCCACTTTTATGTCCTCAGATATTGTCAACAAATTGAGCAAGGCATGTGGGCTATAGTTGATGTTTCCTATAATATCCCCAGAGAAAACCAAGTAGTCTCTCATTCTCCGTGTCACTGCTTTCCTTCGGGCTGCTTGATCCAGGACATGCCTAATGGTTATTCCAAGGTTACTTGGATTGAGCATGTGGAAGTGGAAGATAAAGGCTCGACTCATTGGCTTTTTAGAGATCTTATTCATAGTGGATTAGCCTTTGGTGCTGAACGGTGGCTTGCAACTCTTCAGCGGATGTCTGAAAGGTTTGCCTGTTTAATGGTGACTGGTAGTTCCGGTCAGGATCTAGGCGGAGTAATTCCATCGTCAGAGGGAAAGAGAAGCATGATGAAACTAGCACAGCGGATGGTGAGCAATTTCTGTGCTAGTATCAGCACATCTCATGGCCACCGTTGGACCACCCTTTCTGGGATGAATGAGGTTGGTGTTCGTGTCACAGTTCATAAAAGCGCGGATCCTGGCCAGCCTAATGGCGTGGTTCTTAGTGCAGCTACAACCATATGGCTCCCAGTTTCTCCTCAAACCATCTTTAACTTCTTTAAGAATGACAGAACCAGAGCTCAGTGGGATGTTCTCTCGGATGGCAATCCAGTTCAAGAGGTTGCTCATATAACCAACGGATCCCATCCAGGGAACTGCATATCTGTTCTCAGAGCTTTCAATACGAGTCAGAACAACATGTTGATTCTCCAAGAGAGTTGCATAGACTCATCTGGGTCACTTGTTGTGTACTGCCCTGTAGATCTACCAGCCATGAATGTTGCAATGAGTGGGGAGGACCCATCGAGTATTCCTTTACTACCCTCAGGATTTACAATTTTACCAGACGGGCGGCGGGACCAAGGAGAAGGCGCATCGAGCAGCTCGGACGTGCACAGCAGGTCAGGGGGCTCGCTGGTGACAGTGGCGTTCCAGATACTAGTGAGCAGCTTGCCATCCGGGAAGCTGAATTTGGAGTCAGTGACAACGGTGAATAACCTTATCAGCACCACAGTCCACCAAATCAAAACAGCCTTAAATTGTCATAGCTCCTGA 2127 47.95 MEFGSGGGGSGWDNDSSSDPQRRKKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLQDPYFDEHKLRIENAHLKEELDRVSSIAAKYIGRPISQLPPIQPSHFSSLELSMGSFPSQEMACPSLDLDLLPATSSSVPSLPYHQPIHLSNVDKSLMTEIATNAMGELLRLSQANEPFWMKSPSDGRDVLDLETYEQAFPRANTPLKNLHFRTEASRDSGVVIMNSAALVDMFMDSTKWTELFPTVVSIARTIEVISSGMLGSHNGSLQLMYLELQLPSPLVPTRHFYVLRYCQQIEQGMWAIVDVSYNIPRENQVVSHSPCHCFPSGCLIQDMPNGYSKVTWIEHVEVEDKGSTHWLFRDLIHSGLAFGAERWLATLQRMSERFACLMVTGSSGQDLGGVIPSSEGKRSMMKLAQRMVSNFCASISTSHGHRWTTLSGMNEVGVRVTVHKSADPGQPNGVVLSAATTIWLPVSPQTIFNFFKNDRTRAQWDVLSDGNPVQEVAHITNGSHPGNCISVLRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPAMNVAMSGEDPSSIPLLPSGFTILPDGRRDQGEGASSSSDVHSRSGGSLVTVAFQILVSSLPSGKLNLESVTTVNNLISTTVHQIKTALNCHSS 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 302858 305890 - Lag0024068.1 Lac10g0023 582554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0023 708 SUPERFAMILY Bet v1-like 468 700 - -
Lac10g0023 708 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677(InterPro)
Lac10g0023 708 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 13 705 IPR042160 -
Lac10g0023 708 Gene3D - 12 97 - -
Lac10g0023 708 CDD homeodomain 23 82 IPR001356 GO:0003677(InterPro)
Lac10g0023 708 SMART HOX_1 22 85 IPR001356 GO:0003677(InterPro)
Lac10g0023 708 Pfam Homeodomain 24 79 IPR001356 GO:0003677(InterPro)
Lac10g0023 708 ProSiteProfiles START domain profile. 212 449 IPR002913 GO:0008289(InterPro)
Lac10g0023 708 Gene3D - 221 446 IPR023393 -
Lac10g0023 708 FunFam Homeobox-leucine zipper protein GLABRA 2 221 445 - -
Lac10g0023 708 CDD START_ArGLABRA2_like 216 445 - -
Lac10g0023 708 Pfam START domain 222 445 IPR002913 GO:0008289(InterPro)
Lac10g0023 708 SUPERFAMILY Bet v1-like 215 447 - -
Lac10g0023 708 SUPERFAMILY Homeodomain-like 9 81 IPR009057 -
Lac10g0023 708 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac10g0023 708 MobiDBLite consensus disorder prediction 639 659 - -
Lac10g0023 708 SMART START_1 221 446 IPR002913 GO:0008289(InterPro)
Lac10g0023 708 MobiDBLite consensus disorder prediction 1 30 - -
Lac10g0023 708 FunFam Homeobox-leucine zipper protein HDG1 11 97 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0023 Lac-Chr10:302858 Lac11g0297 Lac-Chr11:2949290 2.10E-209 dispersed
Lac10g0023 Lac-Chr10:302858 Lac12g0611 Lac-Chr12:6484005 6.20E-190 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22687 PF01852 START 1.30E-47 CL0209 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0023 K09338 - csv:101215660 1331.62