Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac10g0024 | ATGTCACTAAGACGTCGTGATGTTGAGCAATGGATGGAACATCGTCGCTTGCCGGAGAATTTAAGAAGGCAAGTACGACAGGCTGAAAGGTACAATTGGGCTTCTACAAGAGGTGTAAATGAAGAAAGGATTTTCGAAAATTTACCTGAGGACCTTCAAAGAAACATAAGACGACATCTCTTTAAATTTGTCAGCAATGTTCGAATTTTTGCACTGATGGACTATGAGCCTATTTTAGATGCAATACGCGAGAGACTGCGTCAAAAGACATACATAGAAGGAAGTGAAGTTTTTTCTGCTGGAGATATCGTCGAGAAGATGGTTTTCATTGTACGGGGGAAAATGGAGAGCCGTGTAGATGGGACTGGGATTGTGGTTCCCTTAATTGAAGGAGATGTCTGCGGTGAGGAACTTCTAACATGGTGTCTTGAGCATTCCTCCATAAACAGAGATATGAAGCGACCTCAATTTCCAGCACAAAGATTGGTCAGCAACCGGACCGTAAAGTGCTTATCAAATGTTGAAGCATTCTCTCTCCGGGCTGCGGACCTTGAAGAAGTGACCAGTATGTTTTCTAGATTCCTGCGAAATCCACGCGTTCAAGGAGCCATAAGGTACGAGTCACCCTACTGGAGGTACCTAGCGGCAACGCGTATTCAAGTAGCTTGGAGATACAGGAAAAGGCGTCTATCTCGAGCTCAAACCTCTCAATCTAACGACTAA | 723 | 44.26 | MSLRRRDVEQWMEHRRLPENLRRQVRQAERYNWASTRGVNEERIFENLPEDLQRNIRRHLFKFVSNVRIFALMDYEPILDAIRERLRQKTYIEGSEVFSAGDIVEKMVFIVRGKMESRVDGTGIVVPLIEGDVCGEELLTWCLEHSSINRDMKRPQFPAQRLVSNRTVKCLSNVEAFSLRAADLEEVTSMFSRFLRNPRVQGAIRYESPYWRYLAATRIQVAWRYRKRRLSRAQTSQSND | 240 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 317598 | 321273 | - | Lag0024069.1 | Lac10g0024 | 582555 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac10g0024 | 240 | Gene3D | Helix hairpin bin | 3 | 61 | - | - | |
| Lac10g0024 | 240 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 1 | 233 | - | - | |
| Lac10g0024 | 240 | SUPERFAMILY | cAMP-binding domain-like | 5 | 195 | IPR018490 | - | |
| Lac10g0024 | 240 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 82 | 139 | IPR000595 | - | |
| Lac10g0024 | 240 | CDD | CAP_ED | 69 | 187 | IPR000595 | - | |
| Lac10g0024 | 240 | Gene3D | Jelly Rolls | 67 | 193 | IPR014710 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g0024 | Lac-Chr10:317598 | Lac3g0268 | Lac-Chr3:1908412 | 3.30E-42 | dispersed | |
| Lac10g0024 | Lac-Chr10:317598 | Lac11g0144 | Lac-Chr11:1326104 | 2.10E-44 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac10g0024 | K05391 | - | csv:101215903 | 451.055 |