Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0025 ATGAGTATGATCTATCAGCGTCAACTACAAAGCACAGTTGACGAGACAAAGGAACATCGACGGAAGGCTCCTTTGGCTGGAAGACAAAATAATAACGAGAATGTTCAAAGTCTTCGCAGTCGCTACGTCGCCTTGGTCAGCTCTCTTACTATTACAATATCGTCTTCCCCTCACAATGCAGTTGCAGACTTCTTCATCTGTTCACACTTTCACTTTCTCCTCCTCTCTGCTGCCCTGGATTTCGCTTCGACGAGTACGGAGTCTAGATACTTAGAAATGGCTGCTTTTGAAAAAGACGATATACCAATGCTATCAAACACTGATCCACCATTGTTGGATGAAGAAGTGGATTCTTATTTTCCTTCATATGCATCATTGGGGCGGAGTTCATCGCTATCAATTCCAACAACTTCTTCTGGGATGTATGGTAGTGAAGCAAATCTTGTTGGTTATACTGGTCCCCTACGAAGTGAAAGAAAAAGTTCATTCATAGTGAATGGTTCAAAATATACTGACCATAAATCTGAAAAACTTTCACAGTCAAATCCAGTTGTGACTGAAAGCAAAACTGCAGAGCAATTGGCAGACAAATTTCCTTCTTCCAAGACAAAGGATGAGTCTGATTGGTACATTCATAACTATGCTGGAAGAAATGAACACTTAATAAGGTCTGGCCAGCTGGGAGTGTGCAATGATCCTTTCTGTATAACTTGCCCAACATATAATTTCAAAGCATCGCAACAGAAAAGCTCAAGAACGGCTGGCATATTTGACCCTGTGTTTCATAACGATCTCTATGGAGAAGGGAAAGGTTGGGCAGGGAAGTTTCGGTCCTTCTGGTGCTTCTTGCTTCCATATATTCCTGGAGTTATGAATCCTCATGCAAAAGTTGTTCAGCAATGGAACAAGTTTTTCGTCATCTCTTGCTTAGTGGCGATCTTCTTGGACCCATTGTTTTTCTTCTTGCTTGCTGTCCAAGAGAAAAATAAGTGCATATTTATCGATAGGACAATGACCACAACATTGGTGGTTTTCCGAAGTGTGACTGATTTTATCTATTTCCTACACATGCTTCTCCAGACAAAGCACAACGGAACTCAAAAGAATACGAGGGGGAGCTCCCTGAATGAAAAAGAACTTCCGCCACCGATCAATTTTTCGCTAATGACAATTGGAAGAGACGAGGAAAGATGTTTTAGTCCTCTAAAGAACTTGATTGATTCTTTGGAGAATGAAAATGGAGAGAATATAAGAGATGAGAAGAAGATTGAGGAGGAGATTCTCTCTTTCTTCTCTAATCTTTACGATCCAGAAGTGGAACCCAAACCTTTTGTTGAAGGGCTGGAGTGGAGCCCCATTTCTCAGAGTGAGAAGTTGGAGTTGGATTCCCCTTTCTCTTTGGAAGAAATTAGGAATGTGATTTTCGAGTGCAATAAGAATAAGTCTCCATGGCCTGATGGGTTCTCTTTGTGGTTCTTCCAGGAAAATTGGGAAGTTATAAAGGAGGATTTGTTTCAGAACTTGATTGATTCTTTGGAGAATGAAAATGGAGAGAATATAAGAGGTGAGAAGAAGATTGAGGAGGAGATTCTCTCTTTCTTCTCTAATCTTTACGATCCAGAAGTGGAACCCAAACCTTTTGTTGAAGGGCTGGAGTGGAGCCCATTTCTCAGAGAAAATTGGGAAGTTATAAAGGAGGATTTGTTTCAGCTAAAGTTCATTGTGAATAGATTGAAAAGAGTTCTTCCCTCTACGATTTCAAAGGCTCAGGATGCTTTCATTTCAGGGAGACAAATCCTTGATCAGGCCCTCATTTCTAATGAAGCTATTGAGGATTATAGGATGAGAAATAAGGAGGGTTTTGGATACCGTTGGAGGTCGTGGGTGTGGAGCTGTATTCGAACAATGGGGTATTCAATCCTTGTTAATGGTTGTCCTAAAGGTCGGATCCATGCTTCTCGAGGCCTTAGACAAGGTGACCTTTTATCGCCTTTTCTTTTCCTTCTAGTTGTGGATGTTCTCAGTATGATGATTTTCAAAGGGTTGGAGGGAGAGATTATTGAAGGTTTTAAGGTGGGTAAGGAAAGAGCTTCTTTGTTGCATCTTCAGTTTTCCAATGGACAAGGTGAGAAGAAGATTGGCCTCCTAGAAGAGAAGCTTTTTCTCCAAAGGAGGCCGATTAACCCTTATTCGTTTCGTGTTGAGTGGGATGCCGACTTATCTCTTTTCCTTGTTAGAGCTCTTCAGGCCGTGTGTAAGAGTTTGGAGAATTTAATGAGGGATTTTCTGTGGAAAGGGGGTGGGGTAGGAAAAGGTGGCCACCTTGTGAGTTGGGAGGATATGGGAAAATTGGTTAACCTTGGGGGTCTGGAGATAGGGAATCTTAGAGTTCGCAACAAAGCCCTGTTAGCTAAATGGCTTTGGCGCTTCCCCCTTGAGTTTCTTCCTTGTGGCATAGGATTATCGGAAACGACAAATGTGACGTCTCTTTTGTCTTTGATTGAGGAGTTTGAGTTTAGATTGGGGAGGAGAGGTGTTCGGTGTTGGAGCCTCTGTCCTTTGACAGGCGAAGGAAGATCTGGATCACATTCTTTGGAGATGCGAATTTGCTTGTTCCGTTTGGGGCCGCTTCTTCCATACGTTCGGGTTGCAGGGGATGAGTTATTCAGATACAAGGAAATGATTGAGGAGTTTCTCCTCCATCCATCGATTCGTGAAAAGGGGAGATTTTTGTGGCAATTTAGGTTGGCTTACGTGGCACCAGAAACCAGAGTTGTTGGTGCAGGCGAATTAGTTGACCATCCGAAGAAAATTGCTATGAATTACCTTAAAGGAAAATTTTTTATAGATTTGCTTGTTGTTTTGCCGCTGCCTCAGATAATAGTTCTTCTAATCCTGCCAAAGTCTTTGGGATCATCTGGAGCAAATTATGCAAAAAATCTATTACGCACTGTAGTTTTGGTTCAATATATTCCCAGATTGTATAGGTTTCTACCTCTTCTTGCTGGCCAGTCTCCAAGTGGCTTTGTATTTGAGACAGCATGGGCAAATTTTGTCATCAATCTTCTCACCTTTATGTTGGCTGGTCATATTGTTGGGTCTTTGTGGTATCTCTTTGGGCTTCAGGGGGTGAATCGATGTTTTCGACATGCCTGCTATGACTCTGGAACTACGAGCTGCTTAGAATATATAGATTGTGGGCATGGGTACGAAGATGAGAGTCAAAATGAGCATCCACTGCGGAAAGCATGGAAAGAAAATCCAAATGCTACGGCATGTTTTGCTAAAGAAGGTTTTGATTATGGAATCTATCTTCAGGCTGTAAATCTTACCACAGAAAATAGTATAATCACGAGATATACTTACTCATTATTTTGGGGATTCCAGCAAATCAGTACTCTGGCTGGGAACCAAGTTCCAAGCTATTATGTCTATGAAGTCCTTTTCACTATGGGTATTATTGGGCTTGGTCTATTGCTGTTTGCCCTTCTCATCGGTAATATGCAGAACTTTCTTCAGTCTCTTGGAAGAAGGAGACTGGAGGAAGACTTAGATCACTTGCTTTGGGATTGTCCGTTTGTCAGCTCTATTTGGAGGCAATTCTTCAAGAGGGAGAGTCCTGTGGCAAACGTGCTTTTTGGCTATTTTGTGGGGTACTTGGCTCAAGAGGAATAG 3675 41.99 MSMIYQRQLQSTVDETKEHRRKAPLAGRQNNNENVQSLRSRYVALVSSLTITISSSPHNAVADFFICSHFHFLLLSAALDFASTSTESRYLEMAAFEKDDIPMLSNTDPPLLDEEVDSYFPSYASLGRSSSLSIPTTSSGMYGSEANLVGYTGPLRSERKSSFIVNGSKYTDHKSEKLSQSNPVVTESKTAEQLADKFPSSKTKDESDWYIHNYAGRNEHLIRSGQLGVCNDPFCITCPTYNFKASQQKSSRTAGIFDPVFHNDLYGEGKGWAGKFRSFWCFLLPYIPGVMNPHAKVVQQWNKFFVISCLVAIFLDPLFFFLLAVQEKNKCIFIDRTMTTTLVVFRSVTDFIYFLHMLLQTKHNGTQKNTRGSSLNEKELPPPINFSLMTIGRDEERCFSPLKNLIDSLENENGENIRDEKKIEEEILSFFSNLYDPEVEPKPFVEGLEWSPISQSEKLELDSPFSLEEIRNVIFECNKNKSPWPDGFSLWFFQENWEVIKEDLFQNLIDSLENENGENIRGEKKIEEEILSFFSNLYDPEVEPKPFVEGLEWSPFLRENWEVIKEDLFQLKFIVNRLKRVLPSTISKAQDAFISGRQILDQALISNEAIEDYRMRNKEGFGYRWRSWVWSCIRTMGYSILVNGCPKGRIHASRGLRQGDLLSPFLFLLVVDVLSMMIFKGLEGEIIEGFKVGKERASLLHLQFSNGQGEKKIGLLEEKLFLQRRPINPYSFRVEWDADLSLFLVRALQAVCKSLENLMRDFLWKGGGVGKGGHLVSWEDMGKLVNLGGLEIGNLRVRNKALLAKWLWRFPLEFLPCGIGLSETTNVTSLLSLIEEFEFRLGRRGVRCWSLCPLTGEGRSGSHSLEMRICLFRLGPLLPYVRVAGDELFRYKEMIEEFLLHPSIREKGRFLWQFRLAYVAPETRVVGAGELVDHPKKIAMNYLKGKFFIDLLVVLPLPQIIVLLILPKSLGSSGANYAKNLLRTVVLVQYIPRLYRFLPLLAGQSPSGFVFETAWANFVINLLTFMLAGHIVGSLWYLFGLQGVNRCFRHACYDSGTTSCLEYIDCGHGYEDESQNEHPLRKAWKENPNATACFAKEGFDYGIYLQAVNLTTENSIITRYTYSLFWGFQQISTLAGNQVPSYYVYEVLFTMGIIGLGLLLFALLIGNMQNFLQSLGRRRLEEDLDHLLWDCPFVSSIWRQFFKRESPVANVLFGYFVGYLAQEE 1224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 324905 342870 - Lag0024070.1 Lac10g0025 582556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0025 1224 SUPERFAMILY Voltage-gated potassium channels 937 1173 - -
Lac10g0025 1224 Coils Coil 406 426 - -
Lac10g0025 1224 MobiDBLite consensus disorder prediction 1 31 - -
Lac10g0025 1224 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 286 370 - -
Lac10g0025 1224 Gene3D - 918 1175 - -
Lac10g0025 1224 MobiDBLite consensus disorder prediction 12 26 - -
Lac10g0025 1224 Pfam Ion transport protein 928 1178 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0025 Lac-Chr10:324905 Lac5g0594 Lac-Chr5:6715005 2.20E-73 dispersed
Lac1g0779 Lac-Chr1:19621707 Lac10g0025 Lac-Chr10:324905 7.90E-24 dispersed
Lac5g1787 Lac-Chr5:35688603 Lac10g0025 Lac-Chr10:324905 4.20E-23 dispersed
Lac10g0025 Lac-Chr10:324905 Lac4g0016 Lac-Chr4:359828 1.00E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0025 K05391 - csv:101215903 451.055