Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0032 ATGGCTCAGACGGCAAGTCGATCCAAATTGCGGTGGGGAGAGCTAGATGACGACGACGGCGATCTCGATTTTCTCTTACCGCCGAAGAAAATTATCGGCCCAGACGAGAACGGCTTGAAGAAGATTATCGAATATCAGTTTAACGAAGAAGGTAACAAAGTCAAGATCACAACCACCACGCGCACTCGCAAGCTCGCCCATGCTCGCCTCAGTAAACACGCCATTGAGCGCCGATCATGGGCCAAGTTCGGCGACGCTGTGCACGAAGACGTAGGCAGCCGCCTCACTATGGTCTCCACTGAGGAGATCCTCCTAGAACGCCCTCGTGCTCCTGGTAGCAAACCAGAAGAGCCAAAGGTTGCAGGAGACCCTCTAGCTCAACTTGGAAAAGGGGGTGCTGTTCTTATGGTCTGTCGAACTTGTGGCAAAAAGGGTGACCACTGGACCTCAAGGTGTCCTTACAAAGATTTGGCACAACAAGGTGAGGGATTGGATAAGACCGCCACACCAGAGGCTACTGCTGCTGCTCCTGGTGCAACGAAGGGAGCATATGTTCCTCCAGGTATGAGAGCAGGGGCAGACCGGACTGGAACCGATATGAGACGCAGGAACGACGAAAACTCTGTTCGTGTCACCAACCTTTCAGAGGATACAAGAGAGCCTGACCTGCTTGAGCTTTTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCAGTTGATCAAAAGACTGGTATGAGCAGAGGATTTGGATTCGTAAACTTTGTGAACCGTGAGGATGCTCAAAGAGCAATCAACAAACTGAATGGATATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCCACTCCAAGGGCTACTTAA 867 50.75 MAQTASRSKLRWGELDDDDGDLDFLLPPKKIIGPDENGLKKIIEYQFNEEGNKVKITTTTRTRKLAHARLSKHAIERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAQQGEGLDKTATPEATAAAPGATKGAYVPPGMRAGADRTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 380064 381548 - Lag0024077.1 Lac10g0032 582563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0032 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 43 283 - -
Lac10g0032 288 Pfam RNA recognition motif 209 275 IPR000504 GO:0003723(InterPro)
Lac10g0032 288 FunFam Eukaryotic translation initiation factor 3 subunit G 172 288 - -
Lac10g0032 288 CDD eIF3G 37 156 IPR024675 -
Lac10g0032 288 SUPERFAMILY RNA-binding domain, RBD 205 286 IPR035979 GO:0003676(InterPro)
Lac10g0032 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Lac10g0032 288 Pfam Eukaryotic translation initiation factor 3 subunit G 32 157 IPR024675 -
Lac10g0032 288 Gene3D - 160 288 IPR012677 -
Lac10g0032 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Lac10g0032 288 SMART rrm1_1 208 281 IPR000504 GO:0003723(InterPro)
Lac10g0032 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Lac10g0032 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723(InterPro)
Lac10g0032 288 MobiDBLite consensus disorder prediction 166 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0032 Lac-Chr10:380064 Lac4g3037 Lac-Chr4:48551790 1.00E-10 dispersed
Lac10g0032 Lac-Chr10:380064 Lac6g0805 Lac-Chr6:6905129 4.90E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0032 K03248 - csv:101212619 537.724