Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0040 ATGGGGAGGAAGAAGAGAACTGAAGGTGGTGGTGAGAGCTCTGAGTCTCAGGATGTTCGTAGCTCCCAACGATCAGCTGATAGGAGAGACTTCCCACAGCAACATGGTGGCAGTGGATACCAGGGTCAGGGTGGGAGAGGTTGGGCTTCTCAGGGGGGACGTGGAGGAGGTCAAGGTGGTGGCCGTGGCCGAGGAACGTCTCAACATCAGCACTATGGAGGACCTCCTGATTACCAAGGCAGGGGTAGAGGTGGGCCATATCAACATGGAGGACGCAGTAACTATGGTGGTGGTAATCGCGGTGGCATGGGTGGTGGTGGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGCCCATCCAGGCCACCAGTTCCCGAGCTGCACCAAGCAACCCCAGTGTATCAAGGTGGGGTGACTCAGCCGATCTCATCTGCGGCGAGTTCTTCCTCCCACCCACCTGATACTTCATCGATAGAACAACAATTTCAGCAAATTTCCATTCAGCAGGAACCTGGTACTCAAAGCCAAGCAATTCAACCTGCACCGCCGTCTAGTAAATCTATGAGATTCCCTCTAAGACCTGGAAAGGGTAGCTCTGGCATAAGGTGTATTGTTAAGGCTAACCACTTCTTTGCTGAGCTGCCAGACAAAGATCTTCATCAGTATGATGTTACTATTACACCTGAAGTCACTTCGCGTGTCTACAATCGAGCTGTAATGGAGCAGCTAGTGAAATTATACAGGGTTTCTCACCTTGGAGATCGACTTCCTGCCTATGATGGAAGAAAAAGTTTATACACAGCTGGTCCTCTTCCTTTCATATCAAATGAGTTTAGAATCACTCTTTTTGATGAAGAAGATGGATCAGGAGGACAAAGACGGGAGAGAGAATTCAAAGTTGTGATCAAATTGGCTGCTCGTGCGGATCTGCACCATTTAGGACTCTTTCTGCAGGGCAGACAGGCTGATGCCCCTCAGGAAGCCCTTCAAGTTTTGGATATTGTTTTACGCGAATTGCCCACTTCAAGGTATTGTCCAGTGGGCCGATCATTTTACTCTCCAGACCTTGGCAGACGTCAGACACTAGGTGAGGGGCTGGAAAGCTGGCGTGGCTTTTATCAGAGTATCCGTCCTACTCAAATGGGGCTCTCTCTAAATATTGATATGTCATCTACTGCTTTCATAGAGCCTTTGCCTGTCATTGATTTTGTGACTCAGCTTCTCAACCGTGATGTGTCATCCAGACCATTATCTGATGCTGACCGTGTGAAGATCAAGAAGGCTCTTCGAGGTGTCAAGGTTGAAGTGACACACCGTGGGAATATGCGCAGAAAATATCGCATATCTGGTTTGACATCACAAGCAACACGAGAGCTTACTTTCCCAGTTGATGAAAGAGGTACTATGAAATCGGTGGTGGAGTACTTCTCTGAAACATATGGGTTTGTTATTCAACATACTCAGTGGCCTTGTCTTCAAGTAGGGAACCAGCAGAGACCTAACTATCTACCTATGGAAGTATGTAAGATTGTTGAAGGCCAGAGGTATTCCAAAAGGCTCAATGAAAGACAGATAACTGCTCTCCTCAAGGTTACATGCCAACGACCACAAGATAGAGAAACAGACATTATGCAGACGGTACGCCATAATGCATATCACAATGATCCATATGCAAAGGAGTTTGGAATTAAGATAAGTGAGAAGCTTGCTTCTGTTGAAGCTCGCATTCTTCCTGCACCATGGCTAAAATATCACGACACTGGCAGAGAAAAAGATTGCTTGCCACAAGTTGGACAGTGGAACATGATGAATAAGAAAATGTTCAATGGTGGTACTGTAAACAACTGGATGTGCATAAATTTTTCCCGCTATGTGCAAGACAGTGTTACCCGTGGGTTTTGTTATGAACTTGCTCAGATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTGCTTCCTCCTATTTTTGCTCGTCCTGATCATGTGGAAAAGGCCCTTAAAACTCGGTATCATGATGCAATGAGCATTCTCCAACCCCAGGGCAAGGAGCTTGATCTGCTTATTGTTGTTTTGCCAGATAACAATGGATCTCTTTATGGTGATTTAAAACGAATCTGTGAAACAGATCTTGGCCTCGTTTCCCAGTGCTGTTTGACTAAGCATGTCTTCAGAATGAGTAAACAGTATTTGGCCAATGTGGCCTTGAAAATAAATGTTAAGGTTGGCGGAAGGAACACAGTACTCGTTGATGCGTTATCTAGGCGCATACCCTTGGTTAGTGACCGGCCTACCATTATATTTGGTGCTGATGTAACCCATCCTCATCCAGGGGAAGACTCAAGTCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCGGAAGTTACAAAATATGCTGGTTTGGTCAGTGCTCAAGCCCATAGGCAAGAGCTTATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTAAGGGGGACAGTCACGGGTGGAATGATCAAGGAACTCCTTATCTCCTTCCGTAGAGCAACTGGACAGAAACCTCAACGCATCATATTTTACAGGGATGGTGTTAGCGAAGGACAATTCTACCAAGTTTTGTTGCATGAGCTGGATGCCATTCGAAAGGCATGTGCTTCTTTGGAACCAAACTACCAACCTCCAGTGACTTTCGTTGTGGTACAGAAGCGTCATCACACTAGGTTGTTTGCTAATAACCATTCTGATCGCCATGCGGTTGACAAGAGTGGGAACATATTGCCTGGTACGGTTGTTGACTCCAAAATTTGTCATCCTACCGAGTTTGATTTCTACCTGTGCAGCCATGCTGGAATCCAGGGTACAAGTCGTCCTGCTCATTACCATGTTCTGTGGGATGAGAACAAGTTCACGGCTGACGGATTGCAGACTCTAACGAATAACCTTTGTTATACGTATGCAAGGTGTACTCGCTCTGTTTCCATTGTGCCCCCAGCGTACTATGCTCATCTTGCTGCATTCCGAGCTCGTTTTTATATGGAACCTGAGACCTCTGACAGTGGGTCAATTAGCAGTGATGCTGCTGCTGGACGTGGTGGTGGTGGTGCTCGCAGTACAAGGGCACCGGGTTTGAATGCTGCTGTTCGACCTTTGCCAGCTCTGAAAGAGAATGTTAAGAGGGTTATGTTCTATTGTTGA 3183 46.65 MGRKKRTEGGGESSESQDVRSSQRSADRRDFPQQHGGSGYQGQGGRGWASQGGRGGGQGGGRGRGTSQHQHYGGPPDYQGRGRGGPYQHGGRSNYGGGNRGGMGGGGGGIGGGPSSGGPSRPPVPELHQATPVYQGGVTQPISSAASSSSHPPDTSSIEQQFQQISIQQEPGTQSQAIQPAPPSSKSMRFPLRPGKGSSGIRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMEQLVKLYRVSHLGDRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRYCPVGRSFYSPDLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFSETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPQDRETDIMQTVRHNAYHNDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMFNGGTVNNWMCINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTRYHDAMSILQPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFRMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSDAAAGRGGGGARSTRAPGLNAAVRPLPALKENVKRVMFYC 1060
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 427453 433496 - Lag0024085.1 Lac10g0040 582571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0040 1060 CDD PAZ_argonaute_like 397 511 - -
Lac10g0040 1060 Pfam Argonaute linker 2 domain 538 584 IPR032472 -
Lac10g0040 1060 Gene3D paz domain 391 516 - -
Lac10g0040 1060 Pfam Mid domain of argonaute 595 670 IPR032473 -
Lac10g0040 1060 Pfam Glycine-rich region of argonaut 73 183 IPR024357 -
Lac10g0040 1060 SMART DUF1785_2 345 397 IPR014811 -
Lac10g0040 1060 ProSiteProfiles PAZ domain profile. 399 512 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Lac10g0040 1060 Pfam N-terminal domain of argonaute 203 336 IPR032474 -
Lac10g0040 1060 Pfam PAZ domain 401 528 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Lac10g0040 1060 CDD Piwi_ago-like 556 1008 IPR045246 -
Lac10g0040 1060 Gene3D - 576 751 - -
Lac10g0040 1060 SMART PAZ_2_a_3 402 534 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Lac10g0040 1060 Pfam Piwi domain 689 1008 IPR003165 GO:0003676(InterPro)
Lac10g0040 1060 FunFam Protein argonaute-2 391 517 - -
Lac10g0040 1060 Pfam Argonaute linker 1 domain 346 396 IPR014811 -
Lac10g0040 1060 SUPERFAMILY Ribonuclease H-like 683 1009 IPR012337 -
Lac10g0040 1060 SUPERFAMILY PAZ domain 205 545 IPR036085 GO:0005515(InterPro)
Lac10g0040 1060 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 191 1015 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Lac10g0040 1060 FunFam Argonaute 10 576 751 - -
Lac10g0040 1060 ProSiteProfiles Piwi domain profile. 688 1009 IPR003165 GO:0003676(InterPro)
Lac10g0040 1060 MobiDBLite consensus disorder prediction 1013 1036 - -
Lac10g0040 1060 MobiDBLite consensus disorder prediction 133 183 - -
Lac10g0040 1060 Gene3D - 757 1060 IPR036397 GO:0003676(InterPro)
Lac10g0040 1060 FunFam protein argonaute 10-like 757 1060 - -
Lac10g0040 1060 SMART Piwi_a_2 688 1009 IPR003165 GO:0003676(InterPro)
Lac10g0040 1060 MobiDBLite consensus disorder prediction 1 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0040 Lac-Chr10:427453 Lac3g0857 Lac-Chr3:6868219 0.00E+00 dispersed
Lac10g0040 Lac-Chr10:427453 Lac7g0694 Lac-Chr7:5568726 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0040 K11593 - csv:101212130 1884.0