Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g0040 | ATGGGGAGGAAGAAGAGAACTGAAGGTGGTGGTGAGAGCTCTGAGTCTCAGGATGTTCGTAGCTCCCAACGATCAGCTGATAGGAGAGACTTCCCACAGCAACATGGTGGCAGTGGATACCAGGGTCAGGGTGGGAGAGGTTGGGCTTCTCAGGGGGGACGTGGAGGAGGTCAAGGTGGTGGCCGTGGCCGAGGAACGTCTCAACATCAGCACTATGGAGGACCTCCTGATTACCAAGGCAGGGGTAGAGGTGGGCCATATCAACATGGAGGACGCAGTAACTATGGTGGTGGTAATCGCGGTGGCATGGGTGGTGGTGGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGCCCATCCAGGCCACCAGTTCCCGAGCTGCACCAAGCAACCCCAGTGTATCAAGGTGGGGTGACTCAGCCGATCTCATCTGCGGCGAGTTCTTCCTCCCACCCACCTGATACTTCATCGATAGAACAACAATTTCAGCAAATTTCCATTCAGCAGGAACCTGGTACTCAAAGCCAAGCAATTCAACCTGCACCGCCGTCTAGTAAATCTATGAGATTCCCTCTAAGACCTGGAAAGGGTAGCTCTGGCATAAGGTGTATTGTTAAGGCTAACCACTTCTTTGCTGAGCTGCCAGACAAAGATCTTCATCAGTATGATGTTACTATTACACCTGAAGTCACTTCGCGTGTCTACAATCGAGCTGTAATGGAGCAGCTAGTGAAATTATACAGGGTTTCTCACCTTGGAGATCGACTTCCTGCCTATGATGGAAGAAAAAGTTTATACACAGCTGGTCCTCTTCCTTTCATATCAAATGAGTTTAGAATCACTCTTTTTGATGAAGAAGATGGATCAGGAGGACAAAGACGGGAGAGAGAATTCAAAGTTGTGATCAAATTGGCTGCTCGTGCGGATCTGCACCATTTAGGACTCTTTCTGCAGGGCAGACAGGCTGATGCCCCTCAGGAAGCCCTTCAAGTTTTGGATATTGTTTTACGCGAATTGCCCACTTCAAGGTATTGTCCAGTGGGCCGATCATTTTACTCTCCAGACCTTGGCAGACGTCAGACACTAGGTGAGGGGCTGGAAAGCTGGCGTGGCTTTTATCAGAGTATCCGTCCTACTCAAATGGGGCTCTCTCTAAATATTGATATGTCATCTACTGCTTTCATAGAGCCTTTGCCTGTCATTGATTTTGTGACTCAGCTTCTCAACCGTGATGTGTCATCCAGACCATTATCTGATGCTGACCGTGTGAAGATCAAGAAGGCTCTTCGAGGTGTCAAGGTTGAAGTGACACACCGTGGGAATATGCGCAGAAAATATCGCATATCTGGTTTGACATCACAAGCAACACGAGAGCTTACTTTCCCAGTTGATGAAAGAGGTACTATGAAATCGGTGGTGGAGTACTTCTCTGAAACATATGGGTTTGTTATTCAACATACTCAGTGGCCTTGTCTTCAAGTAGGGAACCAGCAGAGACCTAACTATCTACCTATGGAAGTATGTAAGATTGTTGAAGGCCAGAGGTATTCCAAAAGGCTCAATGAAAGACAGATAACTGCTCTCCTCAAGGTTACATGCCAACGACCACAAGATAGAGAAACAGACATTATGCAGACGGTACGCCATAATGCATATCACAATGATCCATATGCAAAGGAGTTTGGAATTAAGATAAGTGAGAAGCTTGCTTCTGTTGAAGCTCGCATTCTTCCTGCACCATGGCTAAAATATCACGACACTGGCAGAGAAAAAGATTGCTTGCCACAAGTTGGACAGTGGAACATGATGAATAAGAAAATGTTCAATGGTGGTACTGTAAACAACTGGATGTGCATAAATTTTTCCCGCTATGTGCAAGACAGTGTTACCCGTGGGTTTTGTTATGAACTTGCTCAGATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTGCTTCCTCCTATTTTTGCTCGTCCTGATCATGTGGAAAAGGCCCTTAAAACTCGGTATCATGATGCAATGAGCATTCTCCAACCCCAGGGCAAGGAGCTTGATCTGCTTATTGTTGTTTTGCCAGATAACAATGGATCTCTTTATGGTGATTTAAAACGAATCTGTGAAACAGATCTTGGCCTCGTTTCCCAGTGCTGTTTGACTAAGCATGTCTTCAGAATGAGTAAACAGTATTTGGCCAATGTGGCCTTGAAAATAAATGTTAAGGTTGGCGGAAGGAACACAGTACTCGTTGATGCGTTATCTAGGCGCATACCCTTGGTTAGTGACCGGCCTACCATTATATTTGGTGCTGATGTAACCCATCCTCATCCAGGGGAAGACTCAAGTCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCGGAAGTTACAAAATATGCTGGTTTGGTCAGTGCTCAAGCCCATAGGCAAGAGCTTATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTAAGGGGGACAGTCACGGGTGGAATGATCAAGGAACTCCTTATCTCCTTCCGTAGAGCAACTGGACAGAAACCTCAACGCATCATATTTTACAGGGATGGTGTTAGCGAAGGACAATTCTACCAAGTTTTGTTGCATGAGCTGGATGCCATTCGAAAGGCATGTGCTTCTTTGGAACCAAACTACCAACCTCCAGTGACTTTCGTTGTGGTACAGAAGCGTCATCACACTAGGTTGTTTGCTAATAACCATTCTGATCGCCATGCGGTTGACAAGAGTGGGAACATATTGCCTGGTACGGTTGTTGACTCCAAAATTTGTCATCCTACCGAGTTTGATTTCTACCTGTGCAGCCATGCTGGAATCCAGGGTACAAGTCGTCCTGCTCATTACCATGTTCTGTGGGATGAGAACAAGTTCACGGCTGACGGATTGCAGACTCTAACGAATAACCTTTGTTATACGTATGCAAGGTGTACTCGCTCTGTTTCCATTGTGCCCCCAGCGTACTATGCTCATCTTGCTGCATTCCGAGCTCGTTTTTATATGGAACCTGAGACCTCTGACAGTGGGTCAATTAGCAGTGATGCTGCTGCTGGACGTGGTGGTGGTGGTGCTCGCAGTACAAGGGCACCGGGTTTGAATGCTGCTGTTCGACCTTTGCCAGCTCTGAAAGAGAATGTTAAGAGGGTTATGTTCTATTGTTGA | 3183 | 46.65 | MGRKKRTEGGGESSESQDVRSSQRSADRRDFPQQHGGSGYQGQGGRGWASQGGRGGGQGGGRGRGTSQHQHYGGPPDYQGRGRGGPYQHGGRSNYGGGNRGGMGGGGGGIGGGPSSGGPSRPPVPELHQATPVYQGGVTQPISSAASSSSHPPDTSSIEQQFQQISIQQEPGTQSQAIQPAPPSSKSMRFPLRPGKGSSGIRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMEQLVKLYRVSHLGDRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRYCPVGRSFYSPDLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFSETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPQDRETDIMQTVRHNAYHNDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMFNGGTVNNWMCINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTRYHDAMSILQPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFRMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSDAAAGRGGGGARSTRAPGLNAAVRPLPALKENVKRVMFYC | 1060 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 427453 | 433496 | - | Lag0024085.1 | Lac10g0040 | 582571 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g0040 | 1060 | CDD | PAZ_argonaute_like | 397 | 511 | - | - | |
Lac10g0040 | 1060 | Pfam | Argonaute linker 2 domain | 538 | 584 | IPR032472 | - | |
Lac10g0040 | 1060 | Gene3D | paz domain | 391 | 516 | - | - | |
Lac10g0040 | 1060 | Pfam | Mid domain of argonaute | 595 | 670 | IPR032473 | - | |
Lac10g0040 | 1060 | Pfam | Glycine-rich region of argonaut | 73 | 183 | IPR024357 | - | |
Lac10g0040 | 1060 | SMART | DUF1785_2 | 345 | 397 | IPR014811 | - | |
Lac10g0040 | 1060 | ProSiteProfiles | PAZ domain profile. | 399 | 512 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Lac10g0040 | 1060 | Pfam | N-terminal domain of argonaute | 203 | 336 | IPR032474 | - | |
Lac10g0040 | 1060 | Pfam | PAZ domain | 401 | 528 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Lac10g0040 | 1060 | CDD | Piwi_ago-like | 556 | 1008 | IPR045246 | - | |
Lac10g0040 | 1060 | Gene3D | - | 576 | 751 | - | - | |
Lac10g0040 | 1060 | SMART | PAZ_2_a_3 | 402 | 534 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Lac10g0040 | 1060 | Pfam | Piwi domain | 689 | 1008 | IPR003165 | GO:0003676(InterPro) | |
Lac10g0040 | 1060 | FunFam | Protein argonaute-2 | 391 | 517 | - | - | |
Lac10g0040 | 1060 | Pfam | Argonaute linker 1 domain | 346 | 396 | IPR014811 | - | |
Lac10g0040 | 1060 | SUPERFAMILY | Ribonuclease H-like | 683 | 1009 | IPR012337 | - | |
Lac10g0040 | 1060 | SUPERFAMILY | PAZ domain | 205 | 545 | IPR036085 | GO:0005515(InterPro) | |
Lac10g0040 | 1060 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | 191 | 1015 | - | GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER) | |
Lac10g0040 | 1060 | FunFam | Argonaute 10 | 576 | 751 | - | - | |
Lac10g0040 | 1060 | ProSiteProfiles | Piwi domain profile. | 688 | 1009 | IPR003165 | GO:0003676(InterPro) | |
Lac10g0040 | 1060 | MobiDBLite | consensus disorder prediction | 1013 | 1036 | - | - | |
Lac10g0040 | 1060 | MobiDBLite | consensus disorder prediction | 133 | 183 | - | - | |
Lac10g0040 | 1060 | Gene3D | - | 757 | 1060 | IPR036397 | GO:0003676(InterPro) | |
Lac10g0040 | 1060 | FunFam | protein argonaute 10-like | 757 | 1060 | - | - | |
Lac10g0040 | 1060 | SMART | Piwi_a_2 | 688 | 1009 | IPR003165 | GO:0003676(InterPro) | |
Lac10g0040 | 1060 | MobiDBLite | consensus disorder prediction | 1 | 195 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0040 | Lac-Chr10:427453 | Lac3g0857 | Lac-Chr3:6868219 | 0.00E+00 | dispersed | |
Lac10g0040 | Lac-Chr10:427453 | Lac7g0694 | Lac-Chr7:5568726 | 0.00E+00 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g0040 | K11593 | - | csv:101212130 | 1884.0 |