Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0041 ATGGGCACCCAACTCTTCGTTCTCTCTCTCATTTCCCTCGCTCTTCTCTCCGCAGTTTGTTATTCCGAAGCCCAAGGCTCGAACATGAACGCCATCGACAGATGCTGGAGATCCAACCCATACTGGAGAAGAAACAGGCAGCAACTCGCCGTTTGTTCGGTGGGCTTCGCCGGAAAAATGACCAACAACATCGGCCGAAACCTCATACGCTACGAAGTGACCGACCCCAGCGACGACCCAATAAACCCCCGCCCAGGCACACTCCGACACGGCGCCACAATGATCAGAGCCAAAGTCTGGATCACATTCCGAAAGGACATGCACATTGTGCTTAAGAAGCCACTACTCATCAGCAGCTTCACGGCCATCGACGGCCGCGGCGCCACAGTCCACATCACCGGGAATGCCTGTCTCATGGTCTTCAGGGCCACCAACGTCATAATCCATGGCCTCATCATCCACCACTGCAAGCCTCAGTCTGCCGTCCAAGTCATGGGCCCCAATTCCAAGCTTGTTTCCTTGGGATACGTGGACGGCGATGCCATTCGATTGGTGACTGCGTCTAAGGTCTGGATCGACCACAACACGCTTTACCGGTGTCAGGACGGGCTGATTGACGTCACCAGAGGCTCCACTGACATCACCATTTCCAACAATTGGTTTAGAGACCAAGACAAGGTTATTCTCCTCGGTCACGACGACGGTTATATCCGAGACAGGAACATGAAAGTCACTGTCGTATATAACCACTTCGGACCCAACTGCAACCAGAGAATGCCCAGGATTCGATACGGATATGCGCACGTGACGAACAATTTGTACCAAGGGTGGACGCAATACGCAATCGGAGGGAGCATGAATCCAAGTGTCAAGAGTGAAGCCAACCTGTTCATCGCATCAAAATCAAAACAGATTGTATGGAGCACAGGGAGAGTAGAGGAGACAAAGTGGAGGTTTCATTCAGTAAGAGACGTGTTTGAAAATGGAGCTTCGTTTGCACAAATTGGCGTGGGGCGAGGAAGTGTGAGGCCAAATTACAACGCCCAACAGCGGTTTCGAGTTGCAGATGCCAAGTGGCTGAGATCATTGACAAGCACCTCCGGGGCTTTGCGCTGCTCAGCCAACTCAAGATGTTGA 1137 52.33 MGTQLFVLSLISLALLSAVCYSEAQGSNMNAIDRCWRSNPYWRRNRQQLAVCSVGFAGKMTNNIGRNLIRYEVTDPSDDPINPRPGTLRHGATMIRAKVWITFRKDMHIVLKKPLLISSFTAIDGRGATVHITGNACLMVFRATNVIIHGLIIHHCKPQSAVQVMGPNSKLVSLGYVDGDAIRLVTASKVWIDHNTLYRCQDGLIDVTRGSTDITISNNWFRDQDKVILLGHDDGYIRDRNMKVTVVYNHFGPNCNQRMPRIRYGYAHVTNNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQIVWSTGRVEETKWRFHSVRDVFENGASFAQIGVGRGSVRPNYNAQQRFRVADAKWLRSLTSTSGALRCSANSRC 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 448466 449772 + Lag0024086.1 Lac10g0041 582572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0041 378 PANTHER PECTATE LYASE 18-RELATED 27 374 IPR045032 GO:0030570(InterPro)
Lac10g0041 378 Pfam Pectate lyase 119 297 IPR002022 -
Lac10g0041 378 SUPERFAMILY Pectin lyase-like 29 368 IPR011050 -
Lac10g0041 378 Gene3D - 29 371 IPR012334 -
Lac10g0041 378 PRINTS Pollen allergen Amb family signature 258 277 IPR018082 -
Lac10g0041 378 PRINTS Pollen allergen Amb family signature 52 69 IPR018082 -
Lac10g0041 378 PRINTS Pollen allergen Amb family signature 114 130 IPR018082 -
Lac10g0041 378 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Lac10g0041 378 PRINTS Pollen allergen Amb family signature 349 372 IPR018082 -
Lac10g0041 378 PRINTS Pollen allergen Amb family signature 178 199 IPR018082 -
Lac10g0041 378 SMART amb_all 106 303 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0041 Lac-Chr10:448466 Lac1g3191 Lac-Chr1:52006376 9.30E-84 dispersed
Lac10g0041 Lac-Chr10:448466 Lac10g0659 Lac-Chr10:5127099 5.50E-84 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0041 K01728 - csv:101217103 660.603