Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac10g0060 | ATGGAAGGAAGTGACCAACTTCACTATCATCATCAAACCCATCGCTCAACTACTACCACTTTTCCTCTCCAATTGTTAGATCAGAAGAAGGAATTATACGATTCCCATTCTCAATCATCTCAATCATCTGTAATTGTGGAGAGCAACTCCAAGAACAATAAGCCCTCTCCCTCTCCCAAGAGGAGCTCCACCACCAAGGACCGCCACACCAAAGTGGATGGCCGCGGCCGCCGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTCTTCCAACTCACCCGAGAGCTTGGCCACAAGTCCGACGGCGAAACCATCGAGTGGCTTCTTCAGCAGGCCGAGCCTGCTGTCATTGCTGCCACTGGTACTGGTACCATTCCTGCCAACTTCAACTCTCTCAATACCTCCCTTAGAAGATCCGCTACCACCATTTCTTTACCCTCCCAACTAACATCTTCCTCTTACTACCACCCTGCAATGATGGCATTCAACTCTCAACCGATCAACATGGGTCCAATGACGCAAGCAAAAGAAGATCACTTACCTGATCCGCAGCGTCAAATGGGGAGCTATCTGCTGCAACCGGGCACAGGGGCAATCCCGGCGAATATTCCGGCGAACTTTTGGATGCTTTCGGACGGAAACAGCCAACTACTCAGCGGCGGAGGCGAGTCTTTATGGAGGCTTCCGTCGTCGGCCAACCAAGAGGGCGGTTTATCTTTATACAGAGGACAAAGCTCCGGTGGGTTACGTTTATCGAACCTCCCTGCTCCGTTGACGCTGCTCCCGGGGAAGCCAATGGGGCCGAGTGGGGGAGGCGGCGGAAGCTTGAACGTCTACGGCGGGGCGGGGCCGGACACCGGAGTGTCGTAA | 870 | 53.79 | MEGSDQLHYHHQTHRSTTTTFPLQLLDQKKELYDSHSQSSQSSVIVESNSKNNKPSPSPKRSSTTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATTISLPSQLTSSSYYHPAMMAFNSQPINMGPMTQAKEDHLPDPQRQMGSYLLQPGTGAIPANIPANFWMLSDGNSQLLSGGGESLWRLPSSANQEGGLSLYRGQSSGGLRLSNLPAPLTLLPGKPMGPSGGGGGSLNVYGGAGPDTGVS | 289 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 531156 | 532368 | - | Lag0024105.1 | Lac10g0060 | 582591 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac10g0060 | 289 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 40 | 179 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
| Lac10g0060 | 289 | ProSiteProfiles | TCP domain profile. | 65 | 119 | IPR017887 | - | |
| Lac10g0060 | 289 | Pfam | TCP family transcription factor | 64 | 156 | IPR017887 | - | |
| Lac10g0060 | 289 | MobiDBLite | consensus disorder prediction | 35 | 60 | - | - | |
| Lac10g0060 | 289 | MobiDBLite | consensus disorder prediction | 260 | 289 | - | - | |
| Lac10g0060 | 289 | MobiDBLite | consensus disorder prediction | 61 | 78 | - | - | |
| Lac10g0060 | 289 | MobiDBLite | consensus disorder prediction | 1 | 78 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g0060 | Lac-Chr10:531156 | Lac13g0026 | Lac-Chr13:222938 | 1.80E-34 | dispersed | |
| Lac10g0060 | Lac-Chr10:531156 | Lac13g0309 | Lac-Chr13:2216427 | 9.10E-47 | wgd | |
| Lac10g0060 | Lac-Chr10:531156 | Lac3g0623 | Lac-Chr3:4835985 | 2.50E-57 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 22692 | PF03634 | TCP | 5.00E-35 | No_clan | Lac | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac10g0060 | - | - | - | 0.0 |