Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0072 ATGGGAGAGGTAAACTCATTGGTGCTTCATGGAATGTGGGCTAGCCCTTTTGCGAAAAGGGTCGAACTTGCCCTTAAAATTAAGGGCATCCCTTTCGAATATGTGGAAGAAGATTTGATGAACAAAAACCCAGCAACGGTCCTCAAATACAACCCTGTTTACAAGAAAGTTCCTGTGCTCGTCCACAACGGAAAACCCATTTGCGAATCGCTTGTGATTCTCGAATACATCGATGAAGTGTGGAAGGATCATGGCCCAACCCTTCTGCCTCAAGATCCCTACCGACGAGCCCAGCTTCGGTTCTGGGCCGACTACATCCAGAAACAGTTGTTCGAGGGCATGGTTGCAGCAGTGATGGCGGGAGGGGAAGCGCTAGAGAAAGCGATTAAAGGAGTGAGAGAGAAGCTGAAAGTGCTTGAAGAAGAAGGGATGAAGTGCTTATTGGGAGATAACGAGAGTCCCTTTGTGAATGGAGATCAAGTGGGATATTTGGACATAGTAATGTGGTCAGTGCTTGGAGCTTACAAGATTCACGAAGAGGTTTTGGGAGTCAAAATTGTAGACGAACAGGAAACTCCAGCTGTGTTCTCATGGCTCAAGAGACTGATGGAGCATCCCCTTGCAAAGGACATACTTCCTTCGAAAGACAAAGTCGTGGGGCTGCTTCAGTACGTTAGGAACAATGCTCTCCAGTCCTCTGCTGCTGCTTGA 711 47.68 MGEVNSLVLHGMWASPFAKRVELALKIKGIPFEYVEEDLMNKNPATVLKYNPVYKKVPVLVHNGKPICESLVILEYIDEVWKDHGPTLLPQDPYRRAQLRFWADYIQKQLFEGMVAAVMAGGEALEKAIKGVREKLKVLEEEGMKCLLGDNESPFVNGDQVGYLDIVMWSVLGAYKIHEEVLGVKIVDEQETPAVFSWLKRLMEHPLAKDILPSKDKVVGLLQYVRNNALQSSAAA 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 574386 575177 + Lag0024117.1 Lac10g0072 582603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0072 236 SFLD Main.3: Omega- and Tau-like 6 233 IPR045073 -
Lac10g0072 236 SUPERFAMILY Thioredoxin-like 6 110 IPR036249 -
Lac10g0072 236 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 221 IPR010987 -
Lac10g0072 236 CDD GST_C_Tau 93 223 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Lac10g0072 236 FunFam Glutathione S-transferase U9 89 232 - -
Lac10g0072 236 SFLD Glutathione Transferase (cytosolic) 6 233 IPR040079 -
Lac10g0072 236 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 85 IPR004045 -
Lac10g0072 236 Coils Coil 122 142 - -
Lac10g0072 236 CDD GST_N_Tau 7 81 - -
Lac10g0072 236 SUPERFAMILY GST C-terminal domain-like 79 227 IPR036282 -
Lac10g0072 236 FunFam Tau class glutathione S-transferase 1 89 - -
Lac10g0072 236 Gene3D - 89 233 - -
Lac10g0072 236 Gene3D Glutaredoxin 2 88 - -
Lac10g0072 236 Pfam Glutathione S-transferase, N-terminal domain 7 79 IPR004045 -
Lac10g0072 236 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 9 222 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0072 K00799 - - csv:101203766 323.168
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0069 Lac-Chr10:566406 Lac10g0072 Lac-Chr10:574386 1.10E-95 dispersed
Lac10g0072 Lac-Chr10:574386 Lac7g2133 Lac-Chr7:35007901 4.50E-52 dispersed
Lac10g0072 Lac-Chr10:574386 Lac10g0073 Lac-Chr10:576109 3.60E-86 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g546 . Blo16g00186 . . . . . . Cmo13g01185 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00069 Csa01g00542 Chy12g01546 Cme12g01997 . . . . . . . . . . . Cma13g01130 . . . . . Bhi08g01176 . . Lac10g0072 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001282 1 2 2 3 1 3 0 4 4 3 1 4 2 5 2 1 4 1 1 2 3 3 1 6 4 1 2 3 2 4 75