Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g0086 | ATGGGAAGGGTTAAGCTGAAAATAAAGAAATTGGAGAGCACTGGTAGCAGGCAAGTGACTTACTCTAAGAGAAGGAATGGGATTATGAAGAAAGCTAGAGAACTGGCCATACTCTGCGATATTGATATCGTTCTCCTCATGTTTTCGCCGACGGGAAGGCCGTCGCTATATCAAGGTGAACGCAGCACCATTGAGGAGGTCATTACAAAATTTGCTCAATTGACTCCACAAGAGAGGGCAAAAAGGAAATTGGAAAGCCTTGAAGCGCTGAAGAAAACATTTAAGAAGTTAGACCACGATGTAAACATAAAAGATTTTATGGGTTCAAGCTCTCAAGATTTTGAGCAGGAATTGACCAATGAAGTAACCGTATTGCGAGATCAGATTGCCGATGTACATAAGAGACTGAGCTATTGGAGAAATCTTGATAGTCTCAACAATATAGAACATCTCCAGCAAATGGAAGATCTAGTAAGGGAGTCCCTTAACCAAACACGTCTACACAAGGAAAATGTAAGAAGACATCAAGTACTCTCACAGGACTTCACTAACCAGTATGCGGGAAGTGGGATGTCCTTACCTTTGATGATGGACGAATTGCAAGGCACTCAACCCCTATTATGGCTTCCCAACTATGGCACTCAACATATTACTTTACCAAACGAGCCTAGCTTTCTGCAACCAGGTGATGTTGAATGCTCAATGGCTACATCGTTTCCAAGCTTTCCTAGTTACTTCAACACTGGGAAGCAAATTGAAGCTGGAATCTCTGGTCAAGTTGATAGCATGCCACAAGGTGATGGGGCTTTAAATGAATTAAGTGGAACTTCTTGCTCAACGCTGCAACTTGGTGAGCAATATCCATACCACCCTACATGTGATGGTTCCAACTTCCAAGATGAAAAGAGACTGAATCTTGAGATGGAGATGAACTTGCATGCAAATTGCGTCGAGAATCAACTTAATGGCAAGTTGGAGCTCTCTAGAGCTTTATATGATGACGACCAGCATCCTTGGACTTCTATACCAGGGCCTTGTAGCATTCCAATGTACCAAAGCAATGCGTACCACCATCAACCAAATTGA | 1086 | 42.54 | MGRVKLKIKKLESTGSRQVTYSKRRNGIMKKARELAILCDIDIVLLMFSPTGRPSLYQGERSTIEEVITKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIKDFMGSSSQDFEQELTNEVTVLRDQIADVHKRLSYWRNLDSLNNIEHLQQMEDLVRESLNQTRLHKENVRRHQVLSQDFTNQYAGSGMSLPLMMDELQGTQPLLWLPNYGTQHITLPNEPSFLQPGDVECSMATSFPSFPSYFNTGKQIEAGISGQVDSMPQGDGALNELSGTSCSTLQLGEQYPYHPTCDGSNFQDEKRLNLEMEMNLHANCVENQLNGKLELSRALYDDDQHPWTSIPGPCSIPMYQSNAYHHQPN | 361 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 673299 | 676905 | + | Lag0024131.1 | Lac10g0086 | 582617 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g0086 | 361 | Gene3D | - | 14 | 96 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g0086 | 361 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g0086 | 361 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g0086 | 361 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g0086 | 361 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 201 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lac10g0086 | 361 | FunFam | Agamous-like MADS-box protein AGL30 | 14 | 96 | - | - | |
Lac10g0086 | 361 | Coils | Coil | 77 | 97 | - | - | |
Lac10g0086 | 361 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g0086 | 361 | SUPERFAMILY | SRF-like | 2 | 95 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g0086 | 361 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g0086 | 361 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 54 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0086 | Lac-Chr10:673299 | Lac5g2008 | Lac-Chr5:38525209 | 1.10E-20 | dispersed | |
Lac10g0086 | Lac-Chr10:673299 | Lac13g0329 | Lac-Chr13:2358369 | 4.10E-89 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22696 | PF00319 | SRF-TF | 1.80E-19 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g0086 | - | - | - | 0.0 |