Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0086 ATGGGAAGGGTTAAGCTGAAAATAAAGAAATTGGAGAGCACTGGTAGCAGGCAAGTGACTTACTCTAAGAGAAGGAATGGGATTATGAAGAAAGCTAGAGAACTGGCCATACTCTGCGATATTGATATCGTTCTCCTCATGTTTTCGCCGACGGGAAGGCCGTCGCTATATCAAGGTGAACGCAGCACCATTGAGGAGGTCATTACAAAATTTGCTCAATTGACTCCACAAGAGAGGGCAAAAAGGAAATTGGAAAGCCTTGAAGCGCTGAAGAAAACATTTAAGAAGTTAGACCACGATGTAAACATAAAAGATTTTATGGGTTCAAGCTCTCAAGATTTTGAGCAGGAATTGACCAATGAAGTAACCGTATTGCGAGATCAGATTGCCGATGTACATAAGAGACTGAGCTATTGGAGAAATCTTGATAGTCTCAACAATATAGAACATCTCCAGCAAATGGAAGATCTAGTAAGGGAGTCCCTTAACCAAACACGTCTACACAAGGAAAATGTAAGAAGACATCAAGTACTCTCACAGGACTTCACTAACCAGTATGCGGGAAGTGGGATGTCCTTACCTTTGATGATGGACGAATTGCAAGGCACTCAACCCCTATTATGGCTTCCCAACTATGGCACTCAACATATTACTTTACCAAACGAGCCTAGCTTTCTGCAACCAGGTGATGTTGAATGCTCAATGGCTACATCGTTTCCAAGCTTTCCTAGTTACTTCAACACTGGGAAGCAAATTGAAGCTGGAATCTCTGGTCAAGTTGATAGCATGCCACAAGGTGATGGGGCTTTAAATGAATTAAGTGGAACTTCTTGCTCAACGCTGCAACTTGGTGAGCAATATCCATACCACCCTACATGTGATGGTTCCAACTTCCAAGATGAAAAGAGACTGAATCTTGAGATGGAGATGAACTTGCATGCAAATTGCGTCGAGAATCAACTTAATGGCAAGTTGGAGCTCTCTAGAGCTTTATATGATGACGACCAGCATCCTTGGACTTCTATACCAGGGCCTTGTAGCATTCCAATGTACCAAAGCAATGCGTACCACCATCAACCAAATTGA 1086 42.54 MGRVKLKIKKLESTGSRQVTYSKRRNGIMKKARELAILCDIDIVLLMFSPTGRPSLYQGERSTIEEVITKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIKDFMGSSSQDFEQELTNEVTVLRDQIADVHKRLSYWRNLDSLNNIEHLQQMEDLVRESLNQTRLHKENVRRHQVLSQDFTNQYAGSGMSLPLMMDELQGTQPLLWLPNYGTQHITLPNEPSFLQPGDVECSMATSFPSFPSYFNTGKQIEAGISGQVDSMPQGDGALNELSGTSCSTLQLGEQYPYHPTCDGSNFQDEKRLNLEMEMNLHANCVENQLNGKLELSRALYDDDQHPWTSIPGPCSIPMYQSNAYHHQPN 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 673299 676905 + Lag0024131.1 Lac10g0086 582617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0086 361 Gene3D - 14 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0086 361 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0086 361 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0086 361 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0086 361 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 201 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac10g0086 361 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Lac10g0086 361 Coils Coil 77 97 - -
Lac10g0086 361 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0086 361 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0086 361 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0086 361 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0086 Lac-Chr10:673299 Lac5g2008 Lac-Chr5:38525209 1.10E-20 dispersed
Lac10g0086 Lac-Chr10:673299 Lac13g0329 Lac-Chr13:2358369 4.10E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22696 PF00319 SRF-TF 1.80E-19 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0086 - - - 0.0