Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0087 ATGGCAACTGTCATGACACAGGCTTCAGTCGCCGTCTTTAGGCCATGCACGTCAAGGACGAGGTTCCTTTCGGGTTCGTCGGAAAAGTTTAACAGAGCTTTGTCTGTTAAGCCAACAACTTCTTCAGTTCCCAGTTCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTACCAGGTTTGCCATCCCCAGCTTACCTTGATGGCAGTCTTCCAGGTGACAACGGATTTGATCCTCTAGGACTTGCAGAGGACCCTGAGAACTTGAAGTGGTATGTGCAAGCAGAGCTTGTGAATGGTCGGTGGGCGATGCTCGGAGTTGCAGGTATGCTATTGCCTGAAGTCTTCACAAGTTTTGGAATCATCAACGTACCGAAATGGTACGATGCTGGGAAAGCCGAGTATTTCGCATCATCGTCAACTCTCTTTGTGATCGAGTTCATTCTGTTCCACTATGTGGAAATCAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTAAACCAAGATCCCATTTTCAAGCAATACAGCTTGCCACCAAATGATGTTGGATACCCAGGGGGGATTTTCAACCCACTCAACTTTGAACCAACTCTTGAGGCCAAGGAAAAGGAGATTGCTAATGGGAGATTGGCAATGTTGGCATTCTTGGGATTCATTGTTCAACACAATGTGACAGGAAAAGGTCCATTTGACAACTTCTTGCAGCACATTTCAGACCCATGGCACAACACCATTATCCAAACACTAAGGGGATAA 756 46.16 MATVMTQASVAVFRPCTSRTRFLSGSSEKFNRALSVKPTTSSVPSSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNGRWAMLGVAGMLLPEVFTSFGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIIQTLRG 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 677428 678349 - Lag0024132.1 Lac10g0087 582618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0087 251 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
Lac10g0087 251 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Lac10g0087 251 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
Lac10g0087 251 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 9 245 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Lac10g0087 251 FunFam Chlorophyll a-b binding protein, chloroplastic 63 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0087 Lac-Chr10:677428 Lac2g0020 Lac-Chr2:209409 7.20E-32 dispersed
Lac13g0050 Lac-Chr13:357170 Lac10g0087 Lac-Chr10:677428 5.00E-62 transposed
Lac3g1509 Lac-Chr3:13926876 Lac10g0087 Lac-Chr10:677428 2.40E-41 transposed
Lac6g0319 Lac-Chr6:2619212 Lac10g0087 Lac-Chr10:677428 4.00E-57 transposed
Lac8g2422 Lac-Chr8:42322227 Lac10g0087 Lac-Chr10:677428 5.40E-40 transposed
Lac10g0087 Lac-Chr10:677428 Lac3g0610 Lac-Chr3:4737376 3.60E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0087 K08910 - csv:101218675 479.559