Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0088 ATGGCAGTTCTTGGGATATTGTTAGTGGGGTTTCTTTCTTTCTGCTCATTCTTCGTTCATGTTCATGGAGGAAACTGGATCAATGGCGCTCATGCCACTTTCTATGGAGGCCCCGATGCCTCTGGTACATTGGGTGGGGCTTGTGGATATGGAAATGTATATAGCGAGAACTATGGGACTAAAACGACGGCGTTGAGTGCAGCCTTGTTCGACAATGGGCTGAGCTGTGGGGCTTGCTTTGAAGTCAAGTGTGTGAATGACCGAAAATGGTGCCTCCCCGGCTCCGTCGTGGTCACCACCACCAACTTCTGTCCTCCCGGCGGTTGGTGCGACCCTTCGCTCCGCCACTTCGATCTCTCTCAACCTGCCTTCCAAAGCATCGCTCAACCCATCGCCGGGGTCGTCCCCGTTGCTTATAGAAGGGTTCGATGTGCAAGAAGGGGAGGAATTAAGTTCAGAATTGAGGGCAATCCATACTTCAATTTGGTGCTCATAAGCAATGTGGGAGGTGCAGGAGATGTGCATGCCGTTTACATAAAAGGGTCTAGGACTGGTTGGAGGGCCATGGTCAGAAATTGGGGTCAGAACTGGCAGAGCAACGATTACCTTGTAGGACAAGCCCTATCTTTTAAGGTCACCACCAGTGATGGTCGCTCGGTTGTGTCCTACAATGTTGCCCCTTCTGGATGGTCGTTTGGACAAAGCTTCTTTGGCAAACAGTTCACTTAG 729 51.03 MAVLGILLVGFLSFCSFFVHVHGGNWINGAHATFYGGPDASGTLGGACGYGNVYSENYGTKTTALSAALFDNGLSCGACFEVKCVNDRKWCLPGSVVVTTTNFCPPGGWCDPSLRHFDLSQPAFQSIAQPIAGVVPVAYRRVRCARRGGIKFRIEGNPYFNLVLISNVGGAGDVHAVYIKGSRTGWRAMVRNWGQNWQSNDYLVGQALSFKVTTSDGRSVVSYNVAPSGWSFGQSFFGKQFT 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 679323 681362 - Lag0024133.1 Lac10g0088 582619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0088 242 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 238 IPR007117 -
Lac10g0088 242 SUPERFAMILY PHL pollen allergen 146 237 IPR036749 -
Lac10g0088 242 Gene3D - 149 241 IPR036749 -
Lac10g0088 242 Gene3D - 17 145 IPR036908 -
Lac10g0088 242 Pfam Lytic transglycolase 62 139 IPR009009 -
Lac10g0088 242 Pfam Expansin C-terminal domain 150 227 IPR007117 -
Lac10g0088 242 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Lac10g0088 242 PANTHER EXPANSIN-A15 12 241 IPR002963 GO:0009664(InterPro)
Lac10g0088 242 FunFam Expansin 149 241 - -
Lac10g0088 242 PRINTS Expansin signature 124 137 IPR002963 GO:0009664(InterPro)
Lac10g0088 242 PRINTS Expansin signature 96 106 IPR002963 GO:0009664(InterPro)
Lac10g0088 242 PRINTS Expansin signature 107 124 IPR002963 GO:0009664(InterPro)
Lac10g0088 242 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Lac10g0088 242 PRINTS Expansin signature 148 160 IPR002963 GO:0009664(InterPro)
Lac10g0088 242 PRINTS Expansin signature 160 181 IPR002963 GO:0009664(InterPro)
Lac10g0088 242 PRINTS Expansin signature 195 216 IPR002963 GO:0009664(InterPro)
Lac10g0088 242 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Lac10g0088 242 PRINTS Expansin signature 224 240 IPR002963 GO:0009664(InterPro)
Lac10g0088 242 CDD DPBB_EXPA_N 26 144 - -
Lac10g0088 242 SUPERFAMILY Barwin-like endoglucanases 26 167 IPR036908 -
Lac10g0088 242 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Lac10g0088 242 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Lac10g0088 242 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576(InterPro)
Lac10g0088 242 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576(InterPro)
Lac10g0088 242 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Lac10g0088 242 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Lac10g0088 242 SMART dpbb_1 62 139 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0088 Lac-Chr10:679323 Lac6g1639 Lac-Chr6:23683462 1.20E-95 dispersed
Lac10g0088 Lac-Chr10:679323 Lac13g0330 Lac-Chr13:2362861 5.90E-100 wgd
Lac10g0088 Lac-Chr10:679323 Lac3g0609 Lac-Chr3:4734490 7.70E-100 wgd
Lac10g0088 Lac-Chr10:679323 Lac8g2698 Lac-Chr8:44428667 8.30E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0088 - - - 0.0