Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0096 ATGGATTGCAAGGAGCTCAATTTGAACGAAGATTGTGGTGGCTGTGCTAGCGGGGGAAAAAGTGGGGGAGATGGGTTTATTGACAGGAGCAAAGTGAGGATTTTGCTGTGCGATAATGATTCAAAAAGTTCAGAAGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAAGTCATTTCCGTGAGTTCAGCTAGACAGGTTATTGATGCTTTGAATGCGGAGGGACCTGAAATTGATATTATACTCTCGGAAGTTGACCTCCCAATGGCCAAAGGTATGAAAATGTTGAAGTATATCACCCGGGATAAAGAGCTGCGACGCATTCCTGTTATCATGATGTCAACACAAGATGAGGTCCCTATTGTCGTTAAGTGCTTGAGACTTGGAGCAGCTGACTATCTTGTAAAGCCTTTACGAACAAATGAGCTATTGAACTTATGGACACACATGTGGAGAAGAAGACGCATGCTTGGACTGGCAGAAAAAAACATCTTGAATTATGAATTTGATATGGTGGTATCAGACCCAAGTGATGCCAATACGAATAGTACTACTTTGTTCTCGGATGACACTGATGACAAGTCACGCAGGAGCACAAATCCAGAGGTGGGAGTTGCAACACATCAGGAAGATGAGTCTTGTATTGCTGCTGCACCGGTAGAGCCTCCTGCCGTTCACTCAATGGAACATCAGCCAGATGTACCTGGAATTAGTGAGCGCCGAACAGGGCAACTTTCATCATGCCCTAGAAAGAGTGAACTAAAGATCGGTGAATCATCCGCATTCTTTACCTATGTCAAATCAAGAACTGTAAAAAATAAGGCAGTAGATGTTGAAGACAATGGCAAGCGACTTTCGCTGGATGAGAATCATCAAGAAACTGGTCAGCAGGCAGTTCGTCTTCCCCAAATACAAGAAAGTGGGGAGGCCTTGGAAAGTCGTTCACGAGGAGACGAATTCCCAAGCAGTACTAGTTTTCCTGATTCCTTTTCTATGGAGAGATCTTGTACTCCACCTGCTGGCACAGAACTTCACCGGGAAAGAAACATCAATGAAGAACATTGCTCTCAAGTGCTTGTGCATCCTCGAAATGGATCTCAACTTGATATGTCAGGCTTGCCTGTGCAAACACAAACTGCTTATCCTTTCTATATGCCAGAAGGTATGATGTCGGCGCAACTTTACCAAAAGAACTTGCATGATATGCAAAATCATGCGGCAATGATGTCACAGTACGGTCATTTTCATCATTGCCCTCCCAATGTAAGTGGGGTGGCTTCTTATCCTTATTACCCTATGAATATATGTTTACAGCCTGGTCAAATGCCAGCTACTACTACTAATACTCATTCGTGGCCTTCGTTTGGAAACTCATCTTCCAATGAAGCAAAATCAAACAAATTTGATAGAAGAGAGGCAGCACTGATTAAATTTAGGCAGAAGAGGAAAGAACGTTGTTTTGATAAGAAGATTAGGTATGTTAATAGGAAACGGCTTGCAGAGAGGAGGCCTCGTGTTCGGGGCCAGTTTGTGAGAAAGGTAAATGGTGTCAATGTAGATCTTAATGGACACCCTGCATCTGCTGATGATGTTGAGGATGAAGATGATGAGGAGGAGCAACTATCAAGGGATTCCTCTCATGAGGATGATGGTTCAGGATATTAG 1665 43.3 MDCKELNLNEDCGGCASGGKSGGDGFIDRSKVRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYEFDMVVSDPSDANTNSTTLFSDDTDDKSRRSTNPEVGVATHQEDESCIAAAPVEPPAVHSMEHQPDVPGISERRTGQLSSCPRKSELKIGESSAFFTYVKSRTVKNKAVDVEDNGKRLSLDENHQETGQQAVRLPQIQESGEALESRSRGDEFPSSTSFPDSFSMERSCTPPAGTELHRERNINEEHCSQVLVHPRNGSQLDMSGLPVQTQTAYPFYMPEGMMSAQLYQKNLHDMQNHAAMMSQYGHFHHCPPNVSGVASYPYYPMNICLQPGQMPATTTNTHSWPSFGNSSSNEAKSNKFDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGHPASADDVEDEDDEEEQLSRDSSHEDDGSGY 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 742038 745838 + Lag0024141.1 Lac10g0096 582627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0096 554 SMART REC_2 32 147 IPR001789 GO:0000160(InterPro)
Lac10g0096 554 MobiDBLite consensus disorder prediction 317 336 - -
Lac10g0096 554 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 221 IPR045279 GO:0009736(InterPro)
Lac10g0096 554 ProSiteProfiles Response regulatory domain profile. 33 151 IPR001789 GO:0000160(InterPro)
Lac10g0096 554 MobiDBLite consensus disorder prediction 517 554 - -
Lac10g0096 554 Pfam Response regulator receiver domain 34 145 IPR001789 GO:0000160(InterPro)
Lac10g0096 554 MobiDBLite consensus disorder prediction 447 463 - -
Lac10g0096 554 MobiDBLite consensus disorder prediction 180 210 - -
Lac10g0096 554 SUPERFAMILY CheY-like 30 158 IPR011006 -
Lac10g0096 554 MobiDBLite consensus disorder prediction 283 342 - -
Lac10g0096 554 MobiDBLite consensus disorder prediction 447 466 - -
Lac10g0096 554 Pfam CCT motif 471 513 IPR010402 GO:0005515(InterPro)
Lac10g0096 554 ProSiteProfiles CCT domain profile. 471 513 IPR010402 GO:0005515(InterPro)
Lac10g0096 554 MobiDBLite consensus disorder prediction 529 543 - -
Lac10g0096 554 Gene3D - 32 240 - -
Lac10g0096 554 FunFam Two-component response regulator-like APRR1 32 275 - -
Lac10g0096 554 MobiDBLite consensus disorder prediction 225 250 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0096 K12127 - - csv:101220107 985.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0096 Lac-Chr10:742038 Lac4g0028 Lac-Chr4:517743 1.30E-25 dispersed
Lac12g0090 Lac-Chr12:1045120 Lac10g0096 Lac-Chr10:742038 6.30E-06 transposed
Lac6g0994 Lac-Chr6:9064462 Lac10g0096 Lac-Chr10:742038 3.60E-07 transposed
Lac10g0096 Lac-Chr10:742038 Lac3g0598 Lac-Chr3:4642751 2.10E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g586 . . . . . . . . . . . . . Car11g00166 . . Cpe04g01485 . . . . . . . . . . . . . . . . . . Lsi02g00088 . Chy12g01526 Cme12g01975 . . . . . . . . Sed08g2087 . Cmo11g00182 . . . . . . Bhi08g01139 Tan05g2421 Cmetu12g2014 Lac10g0096 Hepe07g2494 . . Cla04g01184 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003640 0 1 1 1 1 1 3 1 1 1 1 1 3 1 1 3 1 2 2 1 1 2 4 2 2 1 2 3 2 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22698 PF00072 Response_reg 8.10E-17 CL0304 Lac TR