Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0118 ATGGCGCTGTTTAGAAAATTGTTCTACCGGAAGCCTCCAGATCGGCTTCTTGAGATCGCGGAGAGAGTTTACGTGTTCGATTGTTGCTTCTCTACCGACGTCTTGGAAGAGGATGAGTACAAAGTGTACTTGGCTAGCATTATACCAAAGCTGCAGGATCACTTTCCTGATGCTTCTTTCATGGTGTTTAACTTTAGTGAAAGAAAGAGGAAGACTAAAACTTCAGACATATTGTCTCATTACGGTATGACAGTGATGGAATATCCTCTGCAATATGAAGGGTGTCCACTACTGCCACTGGAAATGATCCACCACTTCATTCGGTCGAGTGAAAGCTGGTTGTCCTTGGAGAGACAGAAAAATGTATTGTTGATGAACTGTGAACGAGGAGGATGGCCAATCCTCGCTTTCATGCTTTCAGGTCTATTATTGTACCGTAAACAATATGAAGGGGAGCAGAAGACCCTTGAAATGGTCTACAGGCAAGCTCCTAGAGAACTTTTCCATGTCCTTTCTCCTGTAAACTCACAGCCTTCTCAAATGAGATACCTTCAGTATATTTCTAGGAGAAATTTAGGTTCTGATTGGCCTCCACCTGATACTCCTCTGATTTTAGACTGTCTGATACTTCGAGACCTTCCTTTGCTTGATGGAGGAAATGGGTGCAGGCCTGTCATACGTATTTACGGTCAGGACCCATCAACACCACGAAATAGAAGTCCAAAACTTGTTTTTTCTAGTGCAAAGATGAAAAGACATGGTTCCCAGTATCTACAGGCAGCAAGCAAACTGGTAAAAATGGACGTCCATTGTTATGTTCAAGGGGATGTTGTTCTTGAGTGCATCCATTTAGATCGAGATCTAATACACGAGGAAGTGATGTTTAGAGTTATGTTTCACACGGCGTTTGTCCATTCAAACAGTTTGAAGCTCAATCGTGATGAGGTTGACGTTATATGGGATGCCGTGGAGCAGTTTCCTAAAGATTTTAGAGCAGAGGTACTTTTTGTGGATGCTGATGATGTTGTGCCAAACCTCTCTACAGTGACGAAAAGTGACGACAAAATTGAAATTGAAAGCAATTCGACTGAGGAGTTTTTTGAAGTGGAAGAAATATTTAGCAATATTGTTGACGTGCAGGAAGTTAAGAGGGACTACGATGTTCAAATGGTACATGCTAATGAAACAGATGATATTGACCATCAAGAAGTTTGGAAGGAGGATGCAGATCCTCCTACATTCCAACGCTGTAAATCTTTTGGGGGGAATCGAAACTTGGACAGGAAAATGGATTGTAACGTTGAAGCAGTGAAAGACATAACTGTTGATGACGTGACTTTCATGACAGATGAAAAAGCGGACTCTGGTCTTCATGTAGTGAAGGATATTGTTGTGGATTATGGAGATAAAAAGCCAAATCCTCTGCTATTTTCTGTCAATGTACTGAGACGTATGGGAATCAAGGAACTGATAGACAATGCTTACGACAAGTTGGAAGGGGTGGAGCGTAAAGGGTACGGAGAAGAGACTGCTGCTATTCCAGACATTGAAACAAAGGTTCCTGCGAAAAAGTTGGATTCTGAAGCGTGGAGGCTGAAATATGAGAAGTCGCAGTCACTAGCATCTAGGAAACAGCCTTCATCAACAGCTAAGCTAATAAATCATGCATCTATAGTTAAACAGAAGACCAAACAGCCAGAAGATCAGGACGTTCTTGTAAGACATGCAAAACCAAATACTCTTTCTAGATGGACTCCAAATGAAAAAGAGTCTTACATAAACTCCATGCATGTGTTTTATCCACCATCAAGGTATACCGGTGCCTCGGCAACATCTATCAGCTCTCCTACTAGAGATTCTTATTCATATTCAACTTCAAAATCTGCTTCTGCTACTTTAGGACTGCTGCTGTCAACTGATACAGCTGATGAACAAAAAAGTAACAAGGTGAGTCCTAAAAAACCTTTATGTTCCGCGACAGAGATTCTCACGAGTAAACCACAGTCACCGCTTGGCTCCCCAAGACTATTGCCAAATTCAGTTCTGCATCAAGATCCTACTCTTCCTCTATCTCCAACTACACTTCTACATCCACCAGCTCTTCATGCTAACACATCTTTCTTGCATGCAGCCTCTCCTAAAGCTTCTTTCTCACCGTCTTCGTATTCTCATATAAATGCAAGATCTCCTCCTCCACCTCCACCTCCACCACCACCTCCGCCTTCCAGTCACGTGGCGCCTAAAAGTTCAGCATTGGTGTGTGGAAATACACCTAAGCACAGTGCTCCACCGGCACCACCTCCGCCTCCTGTACGGAGAGCTCAACCACAATTACCTCCCCCACAGCCACCCCCTTCACATGGAGCTCTGCTTTCTCCACACCTCTCAAATGCTGGAGCTTTGCCACCACCCCCTCCCCCACCTCCTCCAATTCAGAGGGCAGCTCCACATTTAACCCAGGGGCGACAGACTTTAACATCTCCAACAACCTGTGTAGTCTCATCATCCCTGCCATCACCAATTTGTGAAGCACCATCACCTAAGACTGGTCCCCTTCCACTGGTTCCCTCTCCTTCCAGACCTTCAGGAGCTATGTCTCCACACCCGGGAGCTAAAGGAGTAAGTTCTTCAACTGATGTGAAAACATCATCTATAGTGAGGGGACGTGGGTTCTCGCGGTTAATGGGCACGGGGGTGGGTGGTACAGTGCCTCAACGATCATCATTAAAACCTCTGCATTGGAGCAAGGTGACTCGGGTACTACAAGGGAGCTTATGGGAAGAATTGCAAAGATCTGGAGATCCTGAAAGTGCACCAGAATTTGATGTATCTGAGCTGGAGACACTTTTCTCTGTCATTGTCCCTAAACCTATTGTTGATTCAGGAGGTAAATCCGGAGGACGAAGGAAGTCAGTTGGATCAAAATTGGACAAAGTTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTAGGATGCCACTATCTGACATGATGGCAGCTGTACTCTCCATGGATGAGTCTGTATTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAGGAGATAGAGCTTCTCAAGGGATACTGTGGTGACAAGGATAAACTTGGAAAGTGCGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTAGAGTCGAAGTTAAGAGTGTTCTCTTTCAAGATTCACTTCAGCTCTCAGATAGTAGAGTTCAGAAAAAGCCTAAACACTGTAAACTCTGTCTGTCAAGAGGTAAAGAATTCTTGCAAATTGAAGGAGATATTGAAGAGAATTCTTTGCCTGGGAAATATGTTAAACCAAGGAACTGCTAGGGGTTCTGCAATTGGATTCAGGTTGGATAGTCTCTCAAAACTCACAGATACACGTGCTTCTAACAATAAGATGACTCTCATGCATTATCTCTGTAAGGTCCTTGCTTCGAAGTCACCATCACTTCTTGATTTTCATCTGGACCTTGGTAGCTTGGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCAGAAGAAATGCAAGCAATAACAAAAGGACTGGACAAGGTGAAGCAGGAACTAGTTGCATCTGAAAGCGATGGCCCCATCTCTGAAACTTTCCATAAGACATTGAAAGGATTTGTTACTCTTGCTGAGACAGAGGTGGAATCTGTGACAGTTCTTTACTCGATGGCGGGTAGAAATGCTGATGCACTTGCACTATATTTTGGTGAGGATCCTGCCCGTTGTCCATTTGAACAAGGATCTGATTCCATGTGTTCAAATCCAATGCAGTTACAGGAACTCTCTTCCATTTCACAAGAAACTTTAGCCTCCCAGAAGGATAATCTAGGACCTGGATCATACCATGCTGTGCCAAGTGCCAACACTAATGGACAACTAAATTATGACTCTGAATTTCCTCCAAATGAACAACAATTTACTTCAATCTTGTGTGATCAAATTGTAGGACCAAGAAGCAAAGGCTTACTTTTTGCAGATTCTAGTTTTGATCCTTCCTGGAAAAAGCTTTTGGAGAATTATCCTAAACTAGAAGTAAAACTGGATCAGTCCCTCTGCAGCAACCCTTCTTGGAAGAGTTCATGTAGAATTGGATGA 4146 43.25 MALFRKLFYRKPPDRLLEIAERVYVFDCCFSTDVLEEDEYKVYLASIIPKLQDHFPDASFMVFNFSERKRKTKTSDILSHYGMTVMEYPLQYEGCPLLPLEMIHHFIRSSESWLSLERQKNVLLMNCERGGWPILAFMLSGLLLYRKQYEGEQKTLEMVYRQAPRELFHVLSPVNSQPSQMRYLQYISRRNLGSDWPPPDTPLILDCLILRDLPLLDGGNGCRPVIRIYGQDPSTPRNRSPKLVFSSAKMKRHGSQYLQAASKLVKMDVHCYVQGDVVLECIHLDRDLIHEEVMFRVMFHTAFVHSNSLKLNRDEVDVIWDAVEQFPKDFRAEVLFVDADDVVPNLSTVTKSDDKIEIESNSTEEFFEVEEIFSNIVDVQEVKRDYDVQMVHANETDDIDHQEVWKEDADPPTFQRCKSFGGNRNLDRKMDCNVEAVKDITVDDVTFMTDEKADSGLHVVKDIVVDYGDKKPNPLLFSVNVLRRMGIKELIDNAYDKLEGVERKGYGEETAAIPDIETKVPAKKLDSEAWRLKYEKSQSLASRKQPSSTAKLINHASIVKQKTKQPEDQDVLVRHAKPNTLSRWTPNEKESYINSMHVFYPPSRYTGASATSISSPTRDSYSYSTSKSASATLGLLLSTDTADEQKSNKVSPKKPLCSATEILTSKPQSPLGSPRLLPNSVLHQDPTLPLSPTTLLHPPALHANTSFLHAASPKASFSPSSYSHINARSPPPPPPPPPPPPSSHVAPKSSALVCGNTPKHSAPPAPPPPPVRRAQPQLPPPQPPPSHGALLSPHLSNAGALPPPPPPPPPIQRAAPHLTQGRQTLTSPTTCVVSSSLPSPICEAPSPKTGPLPLVPSPSRPSGAMSPHPGAKGVSSSTDVKTSSIVRGRGFSRLMGTGVGGTVPQRSSLKPLHWSKVTRVLQGSLWEELQRSGDPESAPEFDVSELETLFSVIVPKPIVDSGGKSGGRRKSVGSKLDKVHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEIELLKGYCGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQIVEFRKSLNTVNSVCQEVKNSCKLKEILKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKMTLMHYLCKVLASKSPSLLDFHLDLGSLEAASKIQLKSLAEEMQAITKGLDKVKQELVASESDGPISETFHKTLKGFVTLAETEVESVTVLYSMAGRNADALALYFGEDPARCPFEQGSDSMCSNPMQLQELSSISQETLASQKDNLGPGSYHAVPSANTNGQLNYDSEFPPNEQQFTSILCDQIVGPRSKGLLFADSSFDPSWKKLLENYPKLEVKLDQSLCSNPSWKSSCRIG 1381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 895096 905883 - Lag0024163.1 Lac10g0118 582649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0118 1381 MobiDBLite consensus disorder prediction 844 863 - -
Lac10g0118 1381 MobiDBLite consensus disorder prediction 642 695 - -
Lac10g0118 1381 SMART it6_source 899 1343 IPR015425 -
Lac10g0118 1381 Pfam C2 domain of PTEN tumour-suppressor protein 198 337 IPR014020 -
Lac10g0118 1381 ProSiteProfiles Formin homology-2 (FH2) domain profile. 899 1301 IPR015425 -
Lac10g0118 1381 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Lac10g0118 1381 MobiDBLite consensus disorder prediction 817 842 - -
Lac10g0118 1381 MobiDBLite consensus disorder prediction 798 814 - -
Lac10g0118 1381 Gene3D Protein tyrosine phosphatase superfamily 14 203 IPR029021 -
Lac10g0118 1381 Gene3D Formin, FH2 domain 901 1268 IPR042201 -
Lac10g0118 1381 MobiDBLite consensus disorder prediction 726 745 - -
Lac10g0118 1381 PANTHER FORMIN-J 1 1265 IPR051144 -
Lac10g0118 1381 Coils Coil 1182 1202 - -
Lac10g0118 1381 Gene3D - 204 336 - -
Lac10g0118 1381 MobiDBLite consensus disorder prediction 713 882 - -
Lac10g0118 1381 MobiDBLite consensus disorder prediction 661 675 - -
Lac10g0118 1381 SUPERFAMILY Formin homology 2 domain (FH2 domain) 802 1261 - -
Lac10g0118 1381 MobiDBLite consensus disorder prediction 760 788 - -
Lac10g0118 1381 Pfam Formin Homology 2 Domain 904 1263 IPR015425 -
Lac10g0118 1381 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Lac10g0118 1381 SMART PTEN_C2_2 198 338 IPR014020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0118 K28090 - - csv:101221127 1981.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0118 Lac-Chr10:895096 Lac2g0546 Lac-Chr2:4064488 1.60E-253 dispersed
Lac10g0107 Lac-Chr10:817923 Lac10g0118 Lac-Chr10:895096 1.30E-29 transposed
Lac10g0118 Lac-Chr10:895096 Lac3g0591 Lac-Chr3:4581722 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g592 Blo04g00779 Blo16g00180 . . . Bpe13g00300 Bma06g00166 . . . Cma10g00209 Cma11g00123 Car10g00196 Car11g00171 . Cpe20g00055 Cpe04g01480 Bhi02g00293 Tan09g2089 . . Hepe09g0095 . . Cla06g01570 Cam06g1735 Cec06g1796 Cco06g1795 Clacu06g1702 Cmu06g1648 Cre06g2459 Cone2ag0827 Cone16ag0189 Cone13ag0054 . Lsi02g00091 Csa01g00571 Chy12g01523 Cme12g01971 . . Bda11g01706 Bda14g00861 . Bpe15g00594 Bma03g00847 . Sed08g0241 Cmo10g00227 Cmo11g00187 Cma13g01093 . Car13g00929 . . Cpe18g00780 Bhi08g01136 Tan05g2418 Cmetu02g1238 Lac10g0118 Hepe07g2490 . . Cla04g01181 Cam04g1237 Cec01g1748 Cco01g1794 Clacu04g1265 Cmu04g1244 Cre01g1538 Lsi06g01445 Csa01g00260 Chy02g02475 Cme02g01861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac13g1726 . 454 930 FH2 protein (formin) Gene Family AT3G25500 66.7 4.6e-165 579.7
Lac9g1078 . 458 881 FH2 protein (formin) Gene Family AT3G25500 63.7 1.9e-142 504.6
Lac3g2794 . 493 894 FH2 protein (formin) Gene Family AT3G25500 51.2 2.0e-104 378.3
Lac11g2477 . 616 1074 FH2 protein (formin) Gene Family AT2G43800 60.5 1.0e-144 511.9
Lac9g1078 . 458 893 FH2 protein (formin) Gene Family AT2G43800 55.0 1.3e-123 441.8
Lac9g2080 . 291 645 FH2 protein (formin) Gene Family AT4G15200 52.4 3.8e-55 213.4
Lac2g1354 . 454 603 FH2 protein (formin) Gene Family AT4G15200 64.9 2.3e-47 187.6
Lac2g1354 . 458 905 FH2 protein (formin) Gene Family AT5G54650 67.5 2.5e-167 587.0
Lac9g2080 . 507 969 FH2 protein (formin) Gene Family AT5G54650 62.7 1.5e-159 561.2
Lac11g2477 . 627 1029 FH2 protein (formin) Gene Family AT5G54650 50.5 3.3e-103 374.0
Lac9g1078 . 8 900 FH2 protein (formin) Gene Family AT5G67470 57.6 9.5e-236 814.3
Lac11g2477 . 608 1072 FH2 protein (formin) Gene Family AT5G67470 58.8 1.2e-134 478.4
Lac13g1726 . 491 926 FH2 protein (formin) Gene Family AT5G67470 62.2 3.4e-132 470.3
Lac3g2794 . 491 896 FH2 protein (formin) Gene Family AT5G67470 51.0 7.8e-105 379.4
Lac13g0243 . 347 826 FH2 protein (formin) Gene Family AT1G59910 51.3 2.7e-124 444.1
Lac9g1078 . 482 858 FH2 protein (formin) Gene Family AT5G48360 50.1 4.7e-90 330.1
Lac2g1354 . 466 877 FH2 protein (formin) Gene Family AT3G05470 51.0 5.3e-106 383.3
Lac9g1078 . 462 857 FH2 protein (formin) Gene Family AT3G05470 51.2 7.7e-105 379.4
Lac11g2471 . 916 1227 FH2 protein (formin) Gene Family AT1G42980 50.5 7.4e-68 255.0
Lac11g2471 . 1 1234 FH2 protein (formin) Gene Family AT1G31810 65.9 0.0e+00 1222.2
Lac3g0591 . 1369 1690 FH2 protein (formin) Gene Family AT5G07650 73.9 2.0e-128 457.6
Lac10g0118 . 982 1270 FH2 protein (formin) Gene Family AT5G07650 70.2 1.4e-110 398.3
Lac2g0546 . 1072 1400 FH2 protein (formin) Gene Family AT5G07650 62.9 8.7e-108 389.0
Lac3g0209 . 935 1253 FH2 protein (formin) Gene Family AT5G07650 62.2 1.1e-107 388.7
Lac11g2471 . 900 1231 FH2 protein (formin) Gene Family AT5G07650 59.6 1.1e-107 388.7
Lac3g0591 . 1296 1680 FH2 protein (formin) Gene Family AT5G07770 69.7 3.4e-141 499.6
Lac10g0118 . 903 1270 FH2 protein (formin) Gene Family AT5G07770 63.4 5.6e-120 429.1
Lac3g0209 . 858 1246 FH2 protein (formin) Gene Family AT5G07770 57.3 1.1e-115 414.8
Lac2g0546 . 996 1392 FH2 protein (formin) Gene Family AT5G07770 57.3 1.9e-115 414.1
Lac11g2471 . 836 1225 FH2 protein (formin) Gene Family AT5G07770 55.8 5.5e-115 412.5
Lac2g0546 . 988 1400 FH2 protein (formin) Gene Family AT3G32400 75.8 7.2e-169 591.3
Lac3g0209 . 842 1255 FH2 protein (formin) Gene Family AT3G32400 66.0 2.7e-147 519.6
Lac11g2471 . 836 1230 FH2 protein (formin) Gene Family AT3G32400 66.0 3.7e-141 499.2
Lac3g0591 . 1296 1690 FH2 protein (formin) Gene Family AT3G32400 65.5 4.9e-141 498.8
Lac10g0118 . 875 1263 FH2 protein (formin) Gene Family AT3G32400 59.2 2.7e-123 439.9
Lac2g0546 . 1 1400 FH2 protein (formin) Gene Family AT2G25050 50.4 0.0e+00 1156.7
Lac3g0209 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 51.9 6.4e-293 1004.6
Lac3g0591 . 1297 1690 FH2 protein (formin) Gene Family AT5G07780 63.0 5.1e-124 442.2
Lac10g0118 . 906 1270 FH2 protein (formin) Gene Family AT5G07780 56.4 1.1e-102 371.3
Lac11g2471 . 837 1226 FH2 protein (formin) Gene Family AT5G07780 52.7 5.5e-102 369.0
Lac2g0546 . 997 1393 FH2 protein (formin) Gene Family AT5G07780 53.2 2.7e-101 366.7
Lac3g0209 . 865 1246 FH2 protein (formin) Gene Family AT5G07780 53.8 7.9e-101 365.2
Lac3g0591 . 1 1699 FH2 protein (formin) Gene Family AT5G07740 63.7 0.0e+00 1115.1
Lac3g0591 . 1368 1697 FH2 protein (formin) Gene Family AT5G07760 73.5 9.2e-127 452.2
Lac10g0118 . 981 1270 FH2 protein (formin) Gene Family AT5G07760 70.7 1.7e-109 394.8
Lac3g0209 . 934 1253 FH2 protein (formin) Gene Family AT5G07760 64.2 8.6e-109 392.5
Lac2g0546 . 1071 1408 FH2 protein (formin) Gene Family AT5G07760 62.9 4.3e-108 390.2
Lac11g2471 . 910 1231 FH2 protein (formin) Gene Family AT5G07760 61.3 3.1e-106 384.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82