Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0120 ATGGGGTGTGTGAACACGAAGCAGGCGGTGTCCGTTACGCCTGCATTCGATCACTCCGGTGTGTTTCGGGACAATGAATCGACGGCGATGGGCAACTCCGGTCGGAGCCGACTCGGGTTGGGGGAGATTGAGAAGGGTTCGAAGCCGAAGACCAAGACGAGGACGAAGACGAAGGGGTCCAGTGAGTTCAATGGGGTTGCGAGCGAGTTGGGTGAGTCGGGTCGGGCGAGTTCTAATGGCGGAGGGAATGAGACTTTGAGCTTCAGATTGGGGAATTTGAACAAGTATATGGAAAGTGAGCAAGTGGCGGCGGGGTGGCCGGCTTGGCTCAGCGCCGTCGCCGGTGAAGCCATTCAGGGTTGGGTTCCGCTCCGGTCTGATGCCTATGAGAAGTTGGAAAAGATTGGACAAGGTACGTATAGCAGTGTATTCCGAGCACGTGAACTTGAAACAGGGAGGATAGTCGCTTTGAAGAAGGTTCGGTTCGACAATTTTGAGCCTGAAAGTGTTCGGTTTATGGCACGAGAGATAATGATTCTTCGAAGGCTTGATCACCCCAACATCATCAAATTGGAGGGCTTAATTACATCTCGTTTATCATGTAGCATTTATCTTGTGTTCGAGTACATGGACCACGACATCACTGGACTCTTGTCCTGCCCCGACATCACTTTTAGTGAATCACAGATTAAATGCTACATGAAACAATTGTTATCCGGGCTTGAGCATTGTCACTCACGTGGCGTAATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCAATAATGAAGGGGTATTGAAGGTGGCTGATTTTGGATTGGCAAACTTCAGTAATTCCGGGCACCGGCAACCTCTAACGAGTCGTGTTGTCACTCTATGGTATCGTCCTCCTGAACTTCTACTGGGTTCAACAGACTATAATGCATCTGTGGATCTTTGGAGTGTTGGCTGTGTTTTCGCAGAACTCCTTGTTGGGAAACCTATTCTTCAAGGAAGAACAGAGGTTGAACAGTTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCTGATGAATACTGGAAAAAATCTAAACTTCCTCATGCCACTTTGTTCAAGCCACAACATCCTTATAATAATTGTTTACGGCAGACCTTCAAAGATCATCCATCGACGACTGTGAACTTGTTAGAAACTCTTCTTTCTATCGAACCATACAAGCGTGGAGTTGCCTCCTCTGCTCTCACATCTGAGTATTTCAGTACAAAACCGTATGCGTGCGATCCATCAAGCATGCCAATATATCCACCTAGCAAAGAGATTGATGCAAAACAAAGAGAGGAGTCTAGAAGGAAAAAAGGTAGTGGAAGAACCCGTGGACTAGATAACCGGAGGTTAACGCGAAAGCATCTCGGAATCAGTAAATTGGCACCAGCAGAGGACTTATCAGTTTCCGCTCGAGATTTGCATAAAATCAGTATTAATGCACAAAATCTTAAAGAAGAAAAGGCTATCAAAGGTGGTGAGGTGCAAAAGCTGTCAATTGATAAATTGGAAGATTCTATACATGTGAAGAATGCATCTCAAGGAGACATTCCTTCTCTGGCCCCCTGCAAGTTTCTACATCAAGTGGCTTTGCCTGGGCAAGACGACGAAGAGACGATGCCTCTATTAGATCGCATTCGAGATCAATTTCACGAGGACACATAA 1689 46.42 MGCVNTKQAVSVTPAFDHSGVFRDNESTAMGNSGRSRLGLGEIEKGSKPKTKTRTKTKGSSEFNGVASELGESGRASSNGGGNETLSFRLGNLNKYMESEQVAAGWPAWLSAVAGEAIQGWVPLRSDAYEKLEKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFSNSGHRQPLTSRVVTLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNNCLRQTFKDHPSTTVNLLETLLSIEPYKRGVASSALTSEYFSTKPYACDPSSMPIYPPSKEIDAKQREESRRKKGSGRTRGLDNRRLTRKHLGISKLAPAEDLSVSARDLHKISINAQNLKEEKAIKGGEVQKLSIDKLEDSIHVKNASQGDIPSLAPCKFLHQVALPGQDDEETMPLLDRIRDQFHEDT 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 912014 915756 - Lag0024165.1 Lac10g0120 582651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0120 562 MobiDBLite consensus disorder prediction 433 459 - -
Lac10g0120 562 MobiDBLite consensus disorder prediction 18 83 - -
Lac10g0120 562 FunFam probable serine/threonine-protein kinase At1g54610 212 452 - -
Lac10g0120 562 Pfam Protein kinase domain 129 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0120 562 Gene3D Transferase(Phosphotransferase) domain 1 212 452 - -
Lac10g0120 562 Gene3D Phosphorylase Kinase; domain 1 116 211 - -
Lac10g0120 562 MobiDBLite consensus disorder prediction 58 83 - -
Lac10g0120 562 PANTHER CELL DIVISION PROTEIN KINASE 129 413 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lac10g0120 562 ProSiteProfiles Protein kinase domain profile. 129 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0120 562 ProSitePatterns Protein kinases ATP-binding region signature. 135 158 IPR017441 GO:0005524(InterPro)
Lac10g0120 562 SMART serkin_6 129 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0120 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0120 562 FunFam probable serine/threonine-protein kinase At1g54610 116 211 - -
Lac10g0120 562 CDD STKc_CDK9_like 129 413 - -
Lac10g0120 562 MobiDBLite consensus disorder prediction 423 459 - -
Lac10g0120 562 SUPERFAMILY Protein kinase-like (PK-like) 123 419 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0120 Lac-Chr10:912014 Lac7g0838 Lac-Chr7:6765851 1.40E-157 dispersed
Lac10g0120 Lac-Chr10:912014 Lac6g0769 Lac-Chr6:6538774 1.20E-42 wgd
Lac10g0120 Lac-Chr10:912014 Lac8g2723 Lac-Chr8:44674473 3.90E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85610 PF00069 Pkinase 1.70E-68 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0120 - - - 0.0