Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0174 ATGGATATTTCAGAATGTGATACAAGCGAAGGCTTGGAGCATAAAATGAAAAAGAGAAAGCTAGAACAGTTTGATAATCCTCCTGAAGATAACAATACGGGCAATGTTCATTCTGGTTCTGTAGGTACGTCTTCAATGGATAATTTCCTGTCGGAAAACGATCCAGCTCCAGATGCCACGTTCATTATATGCTCAAAGTTGGAATCTGAAACAGGACAAACTCATCCAGAGATATGTAATACAAAGGGAAATGTTCATGAAAAGGAGCATGTTGATGAAAAATTGTCAAAGGAGGATATGGATACAAAGCATGAAAATATAAATGATTCTGGTAATCTTATCCTGAATACAGCAGATGTCAAACAAAATTTTGCTACATATAGTGTTGAAATGGAAGAGCCAAGTTCCACAAATGCTTACGAAGAAGACCCTAGGATCTCTGAAGATCCAGGTGGTATGACGGATCATGATGATCATGGAAATGTTGCTAATGTTGTTCAAGAACTGAGGGAGGAGATGATTGATGAGGGGAAGGATGATCATTCTAGAGAAAAATTCTCTGACTCTGGTTATCAATCGCCATGTAATGACCAGGAGTATGAGAGTGATGGTCCATTGAAAAGTTCAGATATAGAGCAGATAAGTGGTGCATGTGATAATAATGCCCTGGAGAAGATTGTGGAAGGTGCCGTGGAGGAAACTTCTGTTCGCTGTTCAGTTGGTGATCATGATGTTGAAACTTCAGCAAGCAGGGAACAGATTATATCAACTCCTTCCTGCATGCCTCCTGAACTGGAAAATGCTGAAACGGCGAAGGAAGAAGTTGTATGTTTCTCAGCTTCTGGTGAGACAAGCAGCAGCGTTGATGCTATCTTTGAAGAGAAAACTCCGTTGCAGGTGTTGGATACTTCAGAGAAAGGAGATTCTATTGGTTCTTCAAGCAAAAAGCTTCTTGTTCTCGATGTAAATGGACTGCTTGCAGATTTTATTTGTTACGTTCCTTATGGATATAAGCCAGACATTATAATAGGACAAAAAGCAGTATTCAAGAGGCCATTTTGTGATGATTTTATAAAGTTTTGTTTTGAAAGATTCGAGGTGGGTGTTTGGTCGTCAAGAACTAGGAGAAATGTGGACATGGTGATAGATTTTCTAATGGGAGATTTCAAACAAAAGTTACTGTTTTGCTGGGATCAATCACATTGTACCGATACCACATTCTCGACCGTCGAGAATAAGCACAAACCTCTAGTCTTAAAGGAAATTCGAAAACTGTGGAAACACCTTAAGCCACGAGAGTTTAACGCATCGAACACTCTATTGTTGGATGATTCCCCACACAAGGCATTGTGCAATCCGGCAAACACTGCAATATTTCCGGTAACATATCGGTTTAGGGATACTGACGATACGTCGTTAGGACCGGGAGGCGATCTTCGAGTTTATTTAGAAGGTTTATCAATGGCAGAAAATGTTCAAAAGTATGTTGAGCAGAATCCTTTTGGTCAACGTCCCATCACAGAAAAGAACCCGTCTTGGAAGTTTTATCGACGAATCATATATTTTGTTGAGCGCCAAAACGATCAGGACGATACCAATTCTTTCAAATGGAACTGA 1617 39.89 MDISECDTSEGLEHKMKKRKLEQFDNPPEDNNTGNVHSGSVGTSSMDNFLSENDPAPDATFIICSKLESETGQTHPEICNTKGNVHEKEHVDEKLSKEDMDTKHENINDSGNLILNTADVKQNFATYSVEMEEPSSTNAYEEDPRISEDPGGMTDHDDHGNVANVVQELREEMIDEGKDDHSREKFSDSGYQSPCNDQEYESDGPLKSSDIEQISGACDNNALEKIVEGAVEETSVRCSVGDHDVETSASREQIISTPSCMPPELENAETAKEEVVCFSASGETSSSVDAIFEEKTPLQVLDTSEKGDSIGSSSKKLLVLDVNGLLADFICYVPYGYKPDIIIGQKAVFKRPFCDDFIKFCFERFEVGVWSSRTRRNVDMVIDFLMGDFKQKLLFCWDQSHCTDTTFSTVENKHKPLVLKEIRKLWKHLKPREFNASNTLLLDDSPHKALCNPANTAIFPVTYRFRDTDDTSLGPGGDLRVYLEGLSMAENVQKYVEQNPFGQRPITEKNPSWKFYRRIIYFVERQNDQDDTNSFKWN 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1318173 1321644 - Lag0024219.1 Lac10g0174 582705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0174 538 PANTHER DULLARD PROTEIN PHOSPHATASE 140 504 IPR050365 GO:0004721(PANTHER)
Lac10g0174 538 MobiDBLite consensus disorder prediction 131 159 - -
Lac10g0174 538 MobiDBLite consensus disorder prediction 7 26 - -
Lac10g0174 538 ProSiteProfiles FCP1 homology domain profile. 311 486 IPR004274 -
Lac10g0174 538 MobiDBLite consensus disorder prediction 138 159 - -
Lac10g0174 538 SUPERFAMILY HAD-like 313 492 IPR036412 -
Lac10g0174 538 MobiDBLite consensus disorder prediction 1 55 - -
Lac10g0174 538 Gene3D - 267 502 IPR023214 -
Lac10g0174 538 MobiDBLite consensus disorder prediction 175 210 - -
Lac10g0174 538 MobiDBLite consensus disorder prediction 27 51 - -
Lac10g0174 538 Pfam NLI interacting factor-like phosphatase 316 492 IPR004274 -
Lac10g0174 538 SMART forpap2 314 471 IPR004274 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0174 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0174 Lac-Chr10:1318173 Lac4g0267 Lac-Chr4:5578292 4.60E-76 dispersed
Lac1g2236 Lac-Chr1:43755772 Lac10g0174 Lac-Chr10:1318173 6.50E-52 transposed
Lac10g0174 Lac-Chr10:1318173 Lac3g0553 Lac-Chr3:4222209 1.40E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g458 . . . . . . . . . . Cma10g00292 Cma11g00214 . Car11g00193 Sed08g0286 Cpe20g00082 Cpe04g01454 Bhi02g00089 Tan09g2033 Cmetu02g0987 . . . . . . . . . . . . . . . Lsi02g00127 Csa01g00609 Chy12g01491 Cme12g01931 . . . . . Bpe15g00572 . . . . Cmo11g00216 . . Car13g00903 . . Cpe18g00711 Bhi08g01074 . . Lac10g0174 Hepe07g2454 . . . . . . . . . Lsi06g01406 Csa01g00303 Chy02g02435 Cme02g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013596 0 3 0 0 0 1 1 1 1 1 0 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 26