Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac10g0177 | ATGTCTTTCGAACACGAGTTCCTGTTCCTTCCCTCGTCCGGGTTCGCCTCAACAATGGCGAACCTCAACTTCCTTTTCTGGTTCCTTCTCTTTATCGTCGTTTTCGGCCTTTGTCTCAGCCCGGGCGGTCTAGCCTGGGCTTTGATTTCAAGGCCAAGAAACAAACCCGTCATCCCTGGACCTTGTGGCATCCCTTTTTTAGGTCAAGTTTCAACCTTTACGTCTTCTCTCACTCATAGAGTTCTCGCCAAGCTCGCTCAGAGCTTAAAGGCGAAACCTTTGATGTCATTCTCAATTGGGTTCACTCGTTTTGTCATTTCCAGCAACCCCATCACTGCCAAAGAGCTTCTGAACAGCTCGGCGTTCGCCGATCGTCCGATCAAGGAATCGGCGTACGAGCTTTTGTTCCATAGAGCAATGGGGTTTGCTCCTTATGGAGAGTATTGGAGGAATCTCAGGAAAATCTCTTCCACTCGTTTGTTCAGTCCTAAGAGTATTTCGAGTTTTGGGGAGTTGAGAGAGAGGATTGGGGTTCAAATGGTGGAGGAAATCAAGGGTTTGATGGAGAAAAATGGGGAAGTTGAAGTGAGGAAAGTTTTGCATTTTGGGTCGTTGAATAATGTGATGGGAAGTGTTTTTGGGAAAAGTAGTTATGAGTTTGGTGGTGAAAGTGAGCTTGAGGGATTGGTGAGTGAAGGGTATGATTTGCTTGGGAGTTTCAATTGGAGTGATCACTTTCCTCTTTTGGGTTGGTTGGATTTGCAAGGTGTGAGAAAAAGGTGCAAAATTTTGGTGGGAAAAGTGAATGTTTTTGTTGGGAAGATCATAGAGGCACATAAAATGAATAGGAGAATAATCAAAGAAAACAACAATCAAGGAAAGCCTCTTCATGACAATGAAGATGGAGATTTTGTTGATGTGTTGCTTGATTTGGAAAAGGAAAACAAACTCACTGACTCTGATATGATTGCTGTGCTGTGGGAGATGATCTTTAGAGGAACAGACACGGTGGCAATTCTCCTAGAATGGATTCTAGCAAGAATGGTTCTTCATCCCGACATCCAAAGGAAACTCCAATCCGAAATCGACCGAGTCGTCAAACCCGGCCGAGACGTTTCGGATACGGACCTCCCAAATCTCCCTTATCTCCATGCAGTTGTCAAAGAGACTCTAAGAATGCACCCGCCGGGCCCACTCCTCTCGTGGGCCCGCCTCGCCATCCACGACACCCACGTCGGCGGCCACTTCGTTCCCGCCGGCACCACGGCCATGGTCAACATGTGGGCCATAACCCACGACGACCAAATCTGGTCCAACCCGACCGTGTACGACCCGGACCGGTTCATCCGAGATGATGTGGCAATCATGGGGTCCGATCTTCGGCTGGCGCCGTTCGGGTCCGGAAGAAGGGTCTGCCCTGGCAAGGCCATGGGGCTAGCCACGGTCGAGCTTTGGCTCGCCCAGTTGGTTCAGAGGTTCGAGTGGGTTCAGGTGGGTGGCGGCTCTGGAAATGGAGTGGACTTGTCTGAGTGTTTGAAGCTGTCACTGGAAATGAAACAGCCCTTGATCTGTAGGGCTGTCCCCAGAGCTGTAGGGTTGATTTGA | 1605 | 49.28 | MSFEHEFLFLPSSGFASTMANLNFLFWFLLFIVVFGLCLSPGGLAWALISRPRNKPVIPGPCGIPFLGQVSTFTSSLTHRVLAKLAQSLKAKPLMSFSIGFTRFVISSNPITAKELLNSSAFADRPIKESAYELLFHRAMGFAPYGEYWRNLRKISSTRLFSPKSISSFGELRERIGVQMVEEIKGLMEKNGEVEVRKVLHFGSLNNVMGSVFGKSSYEFGGESELEGLVSEGYDLLGSFNWSDHFPLLGWLDLQGVRKRCKILVGKVNVFVGKIIEAHKMNRRIIKENNNQGKPLHDNEDGDFVDVLLDLEKENKLTDSDMIAVLWEMIFRGTDTVAILLEWILARMVLHPDIQRKLQSEIDRVVKPGRDVSDTDLPNLPYLHAVVKETLRMHPPGPLLSWARLAIHDTHVGGHFVPAGTTAMVNMWAITHDDQIWSNPTVYDPDRFIRDDVAIMGSDLRLAPFGSGRRVCPGKAMGLATVELWLAQLVQRFEWVQVGGGSGNGVDLSECLKLSLEMKQPLICRAVPRAVGLI | 534 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 1350135 | 1352422 | + | Lag0024222.1 | Lac10g0177 | 582708 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac10g0177 | 534 | PRINTS | P450 superfamily signature | 463 | 472 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g0177 | 534 | PRINTS | P450 superfamily signature | 332 | 349 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g0177 | 534 | PRINTS | P450 superfamily signature | 385 | 396 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g0177 | 534 | PRINTS | E-class P450 group I signature | 426 | 450 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g0177 | 534 | PRINTS | E-class P450 group I signature | 341 | 367 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g0177 | 534 | PRINTS | E-class P450 group I signature | 472 | 495 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g0177 | 534 | PRINTS | E-class P450 group I signature | 462 | 472 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g0177 | 534 | PRINTS | E-class P450 group I signature | 384 | 402 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g0177 | 534 | PRINTS | E-class P450 group I signature | 321 | 338 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g0177 | 534 | FunFam | Cytochrome P450 78A5 | 50 | 529 | - | - | |
| Lac10g0177 | 534 | Gene3D | Cytochrome P450 | 48 | 526 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g0177 | 534 | CDD | CYP78 | 90 | 522 | - | - | |
| Lac10g0177 | 534 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 465 | 474 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac10g0177 | 534 | Pfam | Cytochrome P450 | 59 | 496 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac10g0177 | 534 | PANTHER | CYTOCHROME P450 78A7-RELATED | 19 | 526 | IPR051996 | - | |
| Lac10g0177 | 534 | SUPERFAMILY | Cytochrome P450 | 58 | 529 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g0177 | Lac-Chr10:1350135 | Lac6g0806 | Lac-Chr6:6920298 | 1.30E-192 | dispersed | |
| Lac10g0177 | Lac-Chr10:1350135 | Lac12g1270 | Lac-Chr12:18458668 | 1.30E-136 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac10g0177 | K20619 | - | csv:101203458 | 851.277 |