Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0178 ATGGAAGGCAGCTTCGAGCAGACCCTTCAAGATGGGAAGCTTTATAGACAAGTCAATTCTCTCATTGTTGCTTATCTTCGCGATCACAACCTCACCCAGGCAAGCTTTTTTCTTCAAGTTTTTGGTTATTTAGCATCTGGGTCGTCTCATTTTAGATTTGTTATAACGATTTTGGTCTCTGTTTCCATTTTCCAAGCTGCAAGTGCTGCTGCTTCTGCTACAATGACGCCACTGAATGTTGATATCCCGCCTAATAAGCTTTTGGAGCTCGTTGCAAAGGGTCTTGCAGTGGAGAAAGATGAGATGTTAAGAGGGAATCCTGCTTCTGCATTGTATGAATTTGGTCCATCAGTGCCCACTACATTTGGGTCTACGCAGGCCTCTCGTGCTTCTGCCATCGACTTCAGTGCTGCGCAGGACACAAAAGGTTCGTCGAAGAGTTTTCCAAAGCACGAGACTCGACATCTTTCGGAGCATAAGAATGTTGCCAGATGTGCAAGGTTCAGTGCTGATGGGAGATTTGTTGCCACTGGAAGCGCGGATATGTCAATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAGATGATGCTGCCAGAAGCAAAAGATGGTCCTGTCCGACCTGTTATAAGGACATTTTACGATCACATTCAACCAATAAATGATTTGGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCACACAATAAAGTTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTCAGAGTTATCCAGGATACCCATAACGTGCGTTCGATATCTCTTCATCCTTCAGGAGATTATCTGTTAGCGGGAACGGATCATCCCATTGCCCACCTGTATGATGTCAATACTTTTCAGTGCTTTCTATCTGCAAATGTTCCGGAAATAGGAAATAATGGAGCCATAAATCAGGTCAGGTATTCAGCAACAGGGAGTATGTATGTCACTGCTTCGAAAGACGGTGCAGTTCGTTTATGGGATGGCGTTAGTGCGAAATGTCTCCGCTCCATTGTTAGTGCACATGGCACAGCAGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTTCGTTCTTTCTTGCGGAAAGGACCCCACTGTAAAACTTTGGGACGTGGGGACGGGGAGATTGGTGAAACAATATGTTGGAGCTACTCATATGCAATTGAGGTGTCAGGCTGTCTTCAATGATACTGAGGAGTTTGTGCTGTCAGTAGACGAACCGAGCAATGAGATTGTTATCTGGGATGCTCTGACAGCAGAGAGAGTAGCAAGGTGGCCTTCGAACCACGTCGGTGCACCCCGGTGGCTCGAGCACTCACCAACAGAGTCAGCCTTCATTTCCTGCGGGACCGATAAATCGATACGCTTTTGGAAGGAAACTCTCTAG 1410 45.32 MEGSFEQTLQDGKLYRQVNSLIVAYLRDHNLTQASFFLQVFGYLASGSSHFRFVITILVSVSIFQAASAAASATMTPLNVDIPPNKLLELVAKGLAVEKDEMLRGNPASALYEFGPSVPTTFGSTQASRASAIDFSAAQDTKGSSKSFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPEAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNNGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSIVSAHGTAEATSAKFTKDERFVLSCGKDPTVKLWDVGTGRLVKQYVGATHMQLRCQAVFNDTEEFVLSVDEPSNEIVIWDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKETL 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1359898 1364109 - Lag0024223.1 Lac10g0178 582709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0178 469 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 52 468 IPR044633 GO:0003723(PANTHER)|GO:0005848(InterPro)|GO:0005848(PANTHER)|GO:0031124(InterPro)
Lac10g0178 469 PRINTS G protein beta WD-40 repeat signature 365 379 IPR020472 -
Lac10g0178 469 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Lac10g0178 469 PRINTS G protein beta WD-40 repeat signature 453 467 IPR020472 -
Lac10g0178 469 SMART WD40_4 205 244 IPR001680 GO:0005515(InterPro)
Lac10g0178 469 SMART WD40_4 337 378 IPR001680 GO:0005515(InterPro)
Lac10g0178 469 SMART WD40_4 250 288 IPR001680 GO:0005515(InterPro)
Lac10g0178 469 SMART WD40_4 381 423 IPR001680 GO:0005515(InterPro)
Lac10g0178 469 SMART WD40_4 291 334 IPR001680 GO:0005515(InterPro)
Lac10g0178 469 SMART WD40_4 426 466 IPR001680 GO:0005515(InterPro)
Lac10g0178 469 SMART WD40_4 149 188 IPR001680 GO:0005515(InterPro)
Lac10g0178 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 343 IPR001680 GO:0005515(InterPro)
Lac10g0178 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 334 - -
Lac10g0178 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 212 246 - -
Lac10g0178 469 FunFam Cleavage stimulation factor subunit 50 139 469 - -
Lac10g0178 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 387 IPR001680 GO:0005515(InterPro)
Lac10g0178 469 CDD WD40 152 466 - -
Lac10g0178 469 SUPERFAMILY WD40 repeat-like 148 466 IPR036322 GO:0005515(InterPro)
Lac10g0178 469 Pfam WD domain, G-beta repeat 209 244 IPR001680 GO:0005515(InterPro)
Lac10g0178 469 Pfam WD domain, G-beta repeat 304 334 IPR001680 GO:0005515(InterPro)
Lac10g0178 469 Pfam WD domain, G-beta repeat 339 378 IPR001680 GO:0005515(InterPro)
Lac10g0178 469 Pfam WD domain, G-beta repeat 153 187 IPR001680 GO:0005515(InterPro)
Lac10g0178 469 Pfam WD domain, G-beta repeat 260 280 IPR001680 GO:0005515(InterPro)
Lac10g0178 469 Pfam WD domain, G-beta repeat 444 465 IPR001680 GO:0005515(InterPro)
Lac10g0178 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 253 IPR001680 GO:0005515(InterPro)
Lac10g0178 469 ProSitePatterns Trp-Asp (WD) repeats signature. 365 379 IPR019775 -
Lac10g0178 469 Gene3D - 136 468 IPR015943 GO:0005515(InterPro)
Lac10g0178 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 156 197 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0178 K14406 - - csv:101206503 817.379
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g447 . . . . . . . . Cmo13g01108 . . . . . . Cpe20g00085 . . . . . . . . . . . . . . . . Cone16ag0219 . . Lsi02g00134 Csa01g00616 Chy12g01484 Cme12g01925 . . Bda11g01767 . . . . . Sed08g2132 . . Cma13g01063 . Car13g00899 . . . Bhi08g01068 Tan05g2342 Cmetu12g1898 Lac10g0178 Hepe07g2449 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009578 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 32