Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0179 ATGATTTCTCTGGCAGCGGCGTACGACTCGTTGGACCCGAATGGAAACATTGAGATCAAATGGGATGTCATGTACTGGACTGGAGATGGTTATGTGGCAACTGTGACAATAACCAACTTTCAGATGTATCGACATATAACGAGCCCCGGATGGACCTTGGGATGGGAATGGGCAAAGAATGAGATCATTTGGTCCATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTAGAGAAACCTCCCCACACAGCTGCAAAAGAGATCCAACAGTAGTTGACTTGCTTCCAGGTGTTCCTTACAACAAACAGGTTGCTAGGTGCTGCAAAGGTGGTGTTTTGACAGCTTGGGGACAAGATCCTTCATCTGCTGTTTCTGCCTTCCAATTGACTGTTGGTCACTCTGGTAGTTCAAATAAAACAGTGAGACTTCCCAAGAATTTCACCTTGTATGGTCCAGGGTTAGGTTACACATGCGGCCCAGCAACGGTTGCTCCGACGTCAGCTTTCTACTCATCTGATAGTCGTCGAAAAACTAATGCATTGATGACTTGGAATGTGACATGCACTTACTCGCAGTTTCTTGCTTCTGAAACGCCAACCTGCTGTGTCTCCATGTCATCTTTCTATAACTCAAAGTTCACTCCTTGTAAAGCATGTGCTTGTGGCTGCCAAGACAGAACAGCATGTATCCTGAGCGAATCAGATCTTCAAAGCGTTACGGGATTGAATGCACCTACAAATGACAGTGGATCATTGCTGCAGTGCACGGCACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAACTACAAGGGATACTGGCGGGTGAAGATAACTATCAGCAATTTAAACTATGAACTAAACTACACACAATGGACACTTGTTGTCGAGCACCCCAATTTCAACAACACAATGGAAGTTTATAGCTTTGTCTATAAGCCACTCACCCCCTTCATCTCCAAGAATGACACAGCTCTGTTCTATGGCGTAAAATCTTTCAATGATGTGCTACTTCAAGCAGGGCCAAATGGAAACGTTCACTCAGAGATGATTTTTCAGAAGGATTCAACATTTACATTCAAACAGGGCTGGGCTTTCCCTCGAAAAGTTTACTTTGATGGAGATGAATGTGTGATGCCTTTTCCAGATTCTTACCCCTTCCTGCCCAACTTAGCTAATACAAACCCAATTCTATTGTCAACACTAGCTTGCATTTTGCTTCCCATATTCTTTACATTGTTATCCTAG 1263 43.94 MISLAAAYDSLDPNGNIEIKWDVMYWTGDGYVATVTITNFQMYRHITSPGWTLGWEWAKNEIIWSMQGAEATDQGDCSTFRETSPHSCKRDPTVVDLLPGVPYNKQVARCCKGGVLTAWGQDPSSAVSAFQLTVGHSGSSNKTVRLPKNFTLYGPGLGYTCGPATVAPTSAFYSSDSRRKTNALMTWNVTCTYSQFLASETPTCCVSMSSFYNSKFTPCKACACGCQDRTACILSESDLQSVTGLNAPTNDSGSLLQCTAHNCPIQVHWHVKENYKGYWRVKITISNLNYELNYTQWTLVVEHPNFNNTMEVYSFVYKPLTPFISKNDTALFYGVKSFNDVLLQAGPNGNVHSEMIFQKDSTFTFKQGWAFPRKVYFDGDECVMPFPDSYPFLPNLANTNPILLSTLACILLPIFFTLLS 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1366290 1368236 - Lag0024224.1 Lac10g0179 582710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0179 420 PIRSF COBRA 1 420 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lac10g0179 420 Pfam COBRA-like protein 31 194 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lac10g0179 420 PANTHER PROTEIN COBRA 3 411 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0179 Lac-Chr10:1366290 Lac4g0341 Lac-Chr4:7891089 9.10E-173 dispersed
Lac10g0179 Lac-Chr10:1366290 Lac3g0547 Lac-Chr3:4181393 1.80E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0179 - - - 0.0