Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0179 ATGATTTCTCTGGCAGCGGCGTACGACTCGTTGGACCCGAATGGAAACATTGAGATCAAATGGGATGTCATGTACTGGACTGGAGATGGTTATGTGGCAACTGTGACAATAACCAACTTTCAGATGTATCGACATATAACGAGCCCCGGATGGACCTTGGGATGGGAATGGGCAAAGAATGAGATCATTTGGTCCATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTAGAGAAACCTCCCCACACAGCTGCAAAAGAGATCCAACAGTAGTTGACTTGCTTCCAGGTGTTCCTTACAACAAACAGGTTGCTAGGTGCTGCAAAGGTGGTGTTTTGACAGCTTGGGGACAAGATCCTTCATCTGCTGTTTCTGCCTTCCAATTGACTGTTGGTCACTCTGGTAGTTCAAATAAAACAGTGAGACTTCCCAAGAATTTCACCTTGTATGGTCCAGGGTTAGGTTACACATGCGGCCCAGCAACGGTTGCTCCGACGTCAGCTTTCTACTCATCTGATAGTCGTCGAAAAACTAATGCATTGATGACTTGGAATGTGACATGCACTTACTCGCAGTTTCTTGCTTCTGAAACGCCAACCTGCTGTGTCTCCATGTCATCTTTCTATAACTCAAAGTTCACTCCTTGTAAAGCATGTGCTTGTGGCTGCCAAGACAGAACAGCATGTATCCTGAGCGAATCAGATCTTCAAAGCGTTACGGGATTGAATGCACCTACAAATGACAGTGGATCATTGCTGCAGTGCACGGCACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAACTACAAGGGATACTGGCGGGTGAAGATAACTATCAGCAATTTAAACTATGAACTAAACTACACACAATGGACACTTGTTGTCGAGCACCCCAATTTCAACAACACAATGGAAGTTTATAGCTTTGTCTATAAGCCACTCACCCCCTTCATCTCCAAGAATGACACAGCTCTGTTCTATGGCGTAAAATCTTTCAATGATGTGCTACTTCAAGCAGGGCCAAATGGAAACGTTCACTCAGAGATGATTTTTCAGAAGGATTCAACATTTACATTCAAACAGGGCTGGGCTTTCCCTCGAAAAGTTTACTTTGATGGAGATGAATGTGTGATGCCTTTTCCAGATTCTTACCCCTTCCTGCCCAACTTAGCTAATACAAACCCAATTCTATTGTCAACACTAGCTTGCATTTTGCTTCCCATATTCTTTACATTGTTATCCTAG 1263 43.94 MISLAAAYDSLDPNGNIEIKWDVMYWTGDGYVATVTITNFQMYRHITSPGWTLGWEWAKNEIIWSMQGAEATDQGDCSTFRETSPHSCKRDPTVVDLLPGVPYNKQVARCCKGGVLTAWGQDPSSAVSAFQLTVGHSGSSNKTVRLPKNFTLYGPGLGYTCGPATVAPTSAFYSSDSRRKTNALMTWNVTCTYSQFLASETPTCCVSMSSFYNSKFTPCKACACGCQDRTACILSESDLQSVTGLNAPTNDSGSLLQCTAHNCPIQVHWHVKENYKGYWRVKITISNLNYELNYTQWTLVVEHPNFNNTMEVYSFVYKPLTPFISKNDTALFYGVKSFNDVLLQAGPNGNVHSEMIFQKDSTFTFKQGWAFPRKVYFDGDECVMPFPDSYPFLPNLANTNPILLSTLACILLPIFFTLLS 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1366290 1368236 - Lag0024224.1 Lac10g0179 582710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0179 420 PIRSF COBRA 1 420 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lac10g0179 420 Pfam COBRA-like protein 31 194 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lac10g0179 420 PANTHER PROTEIN COBRA 3 411 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0179 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0179 Lac-Chr10:1366290 Lac4g0341 Lac-Chr4:7891089 9.10E-173 dispersed
Lac10g0179 Lac-Chr10:1366290 Lac3g0547 Lac-Chr3:4181393 1.80E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g419 . . Bda02g00096 . . . . . Cmo13g00564 Cmo18g00449 . . . . . Cpe09g00758 . . . . . . . . . . . . . . . Cone1ag0261 Cone5ag1586 . . . . . . . Blo14g00830 . . . . . . . . . . Cma18g00472 Car13g00425 Car18g00442 . Cpe20g00519 Bhi08g01067 . . Lac10g0179 Hepe07g2448 . . Cla03g00643 Cam03g0759 Cec03g0729 Cco03g0763 Clacu03g0689 Cmu03g1282 Cre03g1039 Lsi02g00890 Csa01g02234 . Cme12g01200
Vvi17g446 . . Bda06g00513 . Bpe12g00518 . . . Cmo13g01107 . Cma10g00289 Cma11g00218 Car10g00271 Car11g00197 Sed08g0288 . Cpe04g01449 Bhi02g00081 Tan09g2023 Cmetu02g0745 . Hepe09g0285 . . Cla06g01531 Cam06g1688 Cec06g1750 Cco06g1748 Clacu06g1655 Cmu06g1602 Cre06g2414 . . Cone13ag0029 . . . Chy12g01483 Cme12g01924 . . . . . . . . . Cmo10g00308 Cmo11g00221 Cma13g01062 . Car13g00898 . . Cpe18g00713 Bhi08g01067 . . Lac10g0179 Hepe07g2448 . . Cla04g01143 Cam04g1196 Cec01g1708 Cco01g1753 Clacu04g1222 Cmu04g1202 Cre01g1500 Lsi06g01402 Csa01g00341 Chy02g02401 Cme02g01813
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g0548 . 48 454 COBRA Gene Family AT5G60920 80.1 7.4e-212 733.8
Lac8g2760 . 61 454 COBRA Gene Family AT5G60920 69.8 2.5e-183 639.0
Lac4g0341 . 31 427 COBRA Gene Family AT5G60920 68.8 2.9e-179 625.5
Lac3g0547 . 103 502 COBRA Gene Family AT5G60920 67.3 7.8e-177 617.5
Lac10g0179 . 19 414 COBRA Gene Family AT5G60920 61.0 2.4e-154 542.7
Lac5g2477 . 54 439 COBRA Gene Family AT5G60920 56.2 2.0e-132 469.9
Lac4g0343 . 42 235 COBRA Gene Family AT5G60920 71.8 2.9e-91 333.2
Lac4g0330 . 29 145 COBRA Gene Family AT5G60920 79.5 1.4e-53 208.0
Lac4g0342 . 13 121 COBRA Gene Family AT5G60920 64.9 1.6e-36 151.4
Lac3g0548 . 18 451 COBRA Gene Family AT3G02210 73.5 1.6e-207 719.5
Lac8g2760 . 47 452 COBRA Gene Family AT3G02210 67.5 1.5e-181 633.3
Lac3g0547 . 75 501 COBRA Gene Family AT3G02210 66.4 1.4e-179 626.7
Lac4g0341 . 5 430 COBRA Gene Family AT3G02210 65.2 1.1e-176 617.1
Lac10g0179 . 5 412 COBRA Gene Family AT3G02210 59.3 5.4e-155 545.0
Lac5g2477 . 23 447 COBRA Gene Family AT3G02210 54.1 5.8e-141 498.4
Lac4g0343 . 12 235 COBRA Gene Family AT3G02210 73.6 1.7e-100 364.0
Lac4g0330 . 31 145 COBRA Gene Family AT3G02210 77.4 1.7e-52 204.5
Lac3g0548 . 18 446 COBRA Gene Family AT3G29810 74.7 9.8e-202 700.3
Lac8g2760 . 43 454 COBRA Gene Family AT3G29810 68.5 1.5e-181 633.3
Lac4g0341 . 14 410 COBRA Gene Family AT3G29810 67.8 6.0e-175 611.3
Lac3g0547 . 86 484 COBRA Gene Family AT3G29810 67.2 1.3e-174 610.1
Lac10g0179 . 7 395 COBRA Gene Family AT3G29810 60.9 4.9e-153 538.5
Lac5g2477 . 36 433 COBRA Gene Family AT3G29810 55.9 5.9e-138 488.4
Lac4g0343 . 10 235 COBRA Gene Family AT3G29810 67.9 4.3e-96 349.4
Lac4g0330 . 26 137 COBRA Gene Family AT3G29810 79.5 2.9e-52 203.8
Lac4g1355 . 152 327 COBRA Gene Family AT3G29810 52.0 7.1e-51 199.1
Lac3g0547 . 80 411 COBRA Gene Family AT5G15630 83.7 3.4e-178 621.7
Lac4g0341 . 9 339 COBRA Gene Family AT5G15630 81.9 3.6e-175 611.7
Lac3g0548 . 31 361 COBRA Gene Family AT5G15630 73.2 8.8e-150 527.3
Lac10g0179 . 5 323 COBRA Gene Family AT5G15630 64.9 1.1e-136 483.8
Lac8g2760 . 45 372 COBRA Gene Family AT5G15630 64.8 3.6e-135 478.8
Lac4g0343 . 27 235 COBRA Gene Family AT5G15630 65.6 3.7e-87 319.3
Lac3g0548 . 18 224 COBRA Gene Family AT5G60950 57.2 4.4e-64 241.9
Lac8g2760 . 57 237 COBRA Gene Family AT5G60950 58.0 2.1e-58 223.0
Lac4g0341 . 8 207 COBRA Gene Family AT5G60950 54.2 2.4e-57 219.5
Lac3g0547 . 99 279 COBRA Gene Family AT5G60950 56.9 1.5e-56 216.9
Lac4g0343 . 8 203 COBRA Gene Family AT5G60950 51.2 3.3e-51 199.1
Lac10g0179 . 15 195 COBRA Gene Family AT5G60950 51.9 1.1e-49 194.1
Lac5g2477 . 27 436 COBRA Gene Family AT1G09790 60.0 1.6e-151 533.5
Lac3g0548 . 32 432 COBRA Gene Family AT1G09790 54.1 2.0e-133 473.4
Lac3g0547 . 89 482 COBRA Gene Family AT1G09790 53.4 8.2e-132 468.0
Lac8g2760 . 47 442 COBRA Gene Family AT1G09790 51.7 1.9e-128 456.8
Lac4g0341 . 3 410 COBRA Gene Family AT1G09790 51.1 4.2e-128 455.7
Lac4g0330 . 29 137 COBRA Gene Family AT1G09790 66.4 5.5e-43 172.9
Lac7g0923 . 31 609 COBRA Gene Family AT4G16120 62.3 1.1e-236 817.0
Lac5g1439 . 63 655 COBRA Gene Family AT4G16120 54.3 2.1e-203 706.4
Lac2g1368 . 133 744 COBRA Gene Family AT4G16120 52.2 1.6e-200 696.8
Lac7g0923 . 6 615 COBRA Gene Family AT3G16860 58.2 1.4e-223 773.5
Lac5g1439 . 56 655 COBRA Gene Family AT3G16860 51.4 6.1e-192 668.3
Lac2g1368 . 130 744 COBRA Gene Family AT3G16860 50.6 1.8e-191 666.8
Lac7g0923 . 9 610 COBRA Gene Family AT5G49270 58.0 1.1e-220 763.8
Lac5g1439 . 53 655 COBRA Gene Family AT5G49270 51.6 1.5e-193 673.7
Lac2g1368 . 98 754 COBRA Gene Family AT3G20580 61.1 1.9e-249 859.4
Lac5g1439 . 10 676 COBRA Gene Family AT3G20580 59.3 8.1e-248 854.0
Lac7g0923 . 27 611 COBRA Gene Family AT3G20580 52.0 2.9e-197 686.0
Lac5g1439 . 39 677 COBRA Gene Family AT4G27110 61.7 6.0e-243 837.8
Lac2g1368 . 114 757 COBRA Gene Family AT4G27110 59.2 2.1e-232 802.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001485 1 3 2 1 2 2 4 2 2 1 2 2 4 3 3 4 3 2 4 2 3 2 3 3 3 3 2 2 2 1 73