Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0182 ATGGGCAGAGGAAGAGTTGAGTTGAAGAGGATTGAGAACAAAATTAACAGGCAAGTCACTTTTGCCAAGAGGAGAAATGGCTTGCTTAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATCATCTTCTCTAATCGTGGCAAGCTCTTTGAGTTTTCTAGTGGCTCTAGCATGATGAAGACGCTAGAGAAATATCGAAGGTGTAGTTATGGTGTACTGGATGCTACCCGTCAAATAAATGAGAATCGGCCACAAAACTTTGATGATTACTTGAACCTAAAAGCCACAGTTGAGTTCATGCAACAATCTCAAAGAAACCTTTTGGGGGAAGATTTAGGGCCATTGAATACCAAGGAACTTGAGCAACTTGAAAATCAATTGGAGACATCCTTGGAGCGCATTAGATCCACAAAGACAAAAAGCCTTCTTGACCAGCTTGCTGATCTTCAACACAAGGAGCATATGCTTGTTGAAGACAACCGAGGTTTAAGAAAGAAGTTGGAAGAAAGCAACGCACAAGTAGCGGCAGCTGCCGCCACCTCCGCCGCATGGGGCTGGGGAGGCGGCGGCACAGCCGTCGGAGGCGACAGCATGGAGTATCCCAGCCGCGTTGGTTCACAATCAGAGGCCTTTTTCCACCCCATAATACAACCCACTCCCACTTTACAAATTGGGTACAATCCTCTTGGTTCAGTAGGGTTCAATAATAATGTTGGACCTCCATCCCAAAATGCCAATGGTTTTCACCTTGGCTGGATGCTTTGA 780 45.64 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFSSGSSMMKTLEKYRRCSYGVLDATRQINENRPQNFDDYLNLKATVEFMQQSQRNLLGEDLGPLNTKELEQLENQLETSLERIRSTKTKSLLDQLADLQHKEHMLVEDNRGLRKKLEESNAQVAAAAATSAAWGWGGGGTAVGGDSMEYPSRVGSQSEAFFHPIIQPTPTLQIGYNPLGSVGFNNNVGPPSQNANGFHLGWML 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1400970 1405012 + Lag0024227.1 Lac10g0182 582713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0182 259 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0182 259 FunFam MADS-box transcription factor 1 13 86 - -
Lac10g0182 259 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0182 259 Pfam K-box region 91 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac10g0182 259 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0182 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0182 259 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac10g0182 259 Gene3D - 13 75 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0182 259 Coils Coil 165 185 - -
Lac10g0182 259 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0182 259 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0182 259 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0182 259 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0182 259 Coils Coil 122 145 - -
Lac10g0182 259 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 193 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac10g0182 259 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0182 Lac-Chr10:1400970 Lac4g1844 Lac-Chr4:37649297 1.20E-61 dispersed
Lac10g0182 Lac-Chr10:1400970 Lac10g0183 Lac-Chr10:1412884 4.60E-42 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22706 PF01486 K-box 1.40E-24 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0182 K09264 - csv:101204197 376.711