Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0192 ATGGCGAGTGACTCAATTGACTCCTTCGCCTCCCCAGAAGATCGCCTAAAAGCCCTAATTTCTTGTCCTTCCGCGAGTACAAAATCCGGCGTAAAAAACGAATCCGTTGAAGGTGAAATTCAAGAAAACCAGCCGCTGATTGACGACAATCCTTCTTCAATCTGTGTAATTTGTTTTTCGGACGATGGAAAAGCGGAGAGAGGCAAGCTTGACTCCTGTGACCACTATTTCTGCTTCGTCTGCATCATGGAGTGGGCGAGGATTGAATCTAGATGCCCTGCTTGCAAGGGCAGGTTCACTGTTGTTCATAGAATTGCGAAGGATGGCTGTCGTCTCCGTGAACGAATTGTTAACATTCCAATGCGAAATCAAGATCAGTCTGCTGTTGGAAATACTACGAATGGGGATCCATATGCAGAAACATGTTGCACTGTGTGCAAGGGTGTGGAAGATGAAGGTCTCATGTTACTATGTGATCTCTGTGATTCAGCTGCTCATACGTATTGTGTCGGCCTAGGTGCTAATGTACCAGAGGGTGATTGGTTTTGCCATGATTGCACTATCTCCAGGGCTCAACATGCTGATGCTGAATTGGATTCTAGTTGCAACGATCAAAATCAAACAGCAACAGTTGATGCACACATTTCCTTTTTCGATATAGTAAAAGAATCAAGTGCTCAAACAGTTGGCGTAGCTCGCAGAAGAGCCCTTTTACAATCAAATCATGAGCCACCTTCAGTTGTTCCCAATTGGAGGAGCAGCGTGGCCCGTAAATCATTGCCTAGCCGTGGTGGTAAAGCTGCTGGAACAAGTGCAAGAACATTACATCGCTGTCGAAACATCCATGGCCATATAAGGGCATTACGTGAAAATTGGGGTGCTTTACGAAGGGGGTCATTGAACTTTCCCGCTAGCAGCTCATCGACATATGGTGGCAACAATTCCAGACGAGATATTGGTGCTGCAGTAAACAACCAAACAGGTCAACCACATTTTTCAACAGCCACAAGCTTGCAGCCACCCTCCCAACCTGAGTGTAACGAAAGCTCTTATGATGTTGAGAAGGCATGGAGGATGATGGAAATTGCAAAGGCAAAGGCTATACGTGAGGGAGATCAAACCTTGAAATCTCCTGCTTGCAGACAAATTAGCACAAAAGTAAAAGATTCCCATACAGCAAAAGGTCAACAGTGCAAAATCAAGAAGCCAAATGAGCCAGCAAAGGATAAGAAGGAAATGGGAAAGTACAGATCGCCAGATTTGGATAATCAACTCTGTCGTCCTGTAGCAAGTAAGAAGAATAAAGGCTCTACTGAGTTTTTTCCTACCAATTCATCTAGTTATGGAGAATCATCCTTGGGTAATATGGTCCAGACATGTCGAGTTGATTTCACCTATGAAAATGGTAGAAAGCCATCAAACAAAATCGTGGATGAACTTTCATCATCCTCCACAATGGCACAAGCCTTGGAAAAAAACTATGCTGCTCGTGAGGCTGACAATGATCACGATGCTAAAAGCGAGATACGAACATTGGTCAAGATCAATCTAAAACTTCTAAGCCGAGACAAAAATTTGGGATATGAAGGATACAAGGAAGTCGCTAGGCTCGCAACTCACACCATAATGGCAGCATGTGGACTAGAGCCCCCTCCAAAATCCAGCAAGCGATTCTTATCATGCTCGGTTTGCAGCCATACAGAAGAAGTCCGGCAGCTTCACAGGTCCACTCTAATGCCAGAATCTTGCAGGGAATGCTTCCTAGTGTTTGTGAAGGATGTTGTTAACGCCCTCATGACCAAAGAATTGAAAGTAAGGGGTAGAAGAAGAAGGTGGTGCAGTGGGGACCTTAAATGGAAGGGCCCACGCCTATCCAATTCCACTGCGATTGGGAGTGAAGTTGGGGCTGGGGCTGGGGTTGAGGGGTGTGTGGGTCAGGAATTTGGTCGAACATGTGGTGGGCTTGATGTGAAACTACTCTCTGCTTTGCTGTGGAGTCTCTGTAATGCCACAATGTCACGGTTAGGGTTTCCTTTCCTTTCCTTAATTCCTTACAGACGCAGTACGCCGCTCCCAGCCTCTCTCTGTTCAACCACCGCCGCCGTTCAACCACCGTTGCTCGCACTTTCATTCGCGCATCGCAGCAGCCAAGCCAGCAAGTGTCGGAATGCGAGCGTTTTTCCAGTCGTCGATTCAGATCTCTTTGGCGGTGATTCCATGGAGAATGAGCTGGTGGAATTGTTTGAAGCGGCGAAGAAGGCTGCAGACGTCGCTGCAACATCATCAAATGATGGGGGAGCCGAGGAAAGTCGTTGTCTAGATGCCCTACGGCAGCTCAAGAAATTTCCTGTTACTTATCAAATCCTTGTTTCCACTCAGGTTGGGAAGCGGCTTCGACACCTCACTAAACACCCCAGGAAGAAAATACAGGACTATGCTTCTGACCTGATTGAGATGTGGAAGGACATAGTAATCAAGGAGACCAACAAGAATAAGAAAAATGGAAATGCCAACTGTAAAGAGCCACCTAAAGTTGGTTCTCCCAGTGCAGAGTCCGTTAAGGTGGAGAAGTTTCAAAAATCATCTTCCATGAAGGTTGAGAAAGTTTCCAAGGTTGAGCACTTCGATAGGAATGGTGCTACAAGCTCTGTAAAATTTTCCAGATCAGAAAGTGCCATCTCGGAGAAAAACTCTGTAAAGGTTGAGAAAACTGATTCAGTTGTCAAGGTTGAAAGAATAGTTAAAGAAGAGAAGAAAATCTCAATAGAAAAGAAACCATCAGGTGGGGTTGCTGCACCTCCAAAGCTTACTTCCATGATTAAATCAAAAGATGCTGCTCGGACAAAATTAGAGAACTTCTCTTTGAGGCCTTCTCCAAGACTTTCGAGAAAAGTTCTTCTTGGACTTATCAAGCCAGAAAGGGTGATCAACTTGAGCACAGCTGATATGGCAAGTGATCAGAGAAAACGTGAGAATGAGGAGATTGCACAAAAGGCTTTATTTGATTGTGAGCGTGGAGGAGCTCCAAAAGCTACTACCGATCAGTTCAAGTGCGGTCGATGTGGTCAACGCAAGACAACCTACTATCAGTTGCAGACGCGGAGTGCTGATGAACCTATGACCACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGTTGA 3171 45.41 MASDSIDSFASPEDRLKALISCPSASTKSGVKNESVEGEIQENQPLIDDNPSSICVICFSDDGKAERGKLDSCDHYFCFVCIMEWARIESRCPACKGRFTVVHRIAKDGCRLRERIVNIPMRNQDQSAVGNTTNGDPYAETCCTVCKGVEDEGLMLLCDLCDSAAHTYCVGLGANVPEGDWFCHDCTISRAQHADAELDSSCNDQNQTATVDAHISFFDIVKESSAQTVGVARRRALLQSNHEPPSVVPNWRSSVARKSLPSRGGKAAGTSARTLHRCRNIHGHIRALRENWGALRRGSLNFPASSSSTYGGNNSRRDIGAAVNNQTGQPHFSTATSLQPPSQPECNESSYDVEKAWRMMEIAKAKAIREGDQTLKSPACRQISTKVKDSHTAKGQQCKIKKPNEPAKDKKEMGKYRSPDLDNQLCRPVASKKNKGSTEFFPTNSSSYGESSLGNMVQTCRVDFTYENGRKPSNKIVDELSSSSTMAQALEKNYAAREADNDHDAKSEIRTLVKINLKLLSRDKNLGYEGYKEVARLATHTIMAACGLEPPPKSSKRFLSCSVCSHTEEVRQLHRSTLMPESCRECFLVFVKDVVNALMTKELKVRGRRRRWCSGDLKWKGPRLSNSTAIGSEVGAGAGVEGCVGQEFGRTCGGLDVKLLSALLWSLCNATMSRLGFPFLSLIPYRRSTPLPASLCSTTAAVQPPLLALSFAHRSSQASKCRNASVFPVVDSDLFGGDSMENELVELFEAAKKAADVAATSSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRHLTKHPRKKIQDYASDLIEMWKDIVIKETNKNKKNGNANCKEPPKVGSPSAESVKVEKFQKSSSMKVEKVSKVEHFDRNGATSSVKFSRSESAISEKNSVKVEKTDSVVKVERIVKEEKKISIEKKPSGGVAAPPKLTSMIKSKDAARTKLENFSLRPSPRLSRKVLLGLIKPERVINLSTADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 1056
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1476479 1483772 - Lag0024237.1 Lac10g0192 582723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0192 1056 NCBIfam transcription elongation factor S-II 751 1056 IPR006289 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0006368(InterPro)
Lac10g0192 1056 SMART ring_2 143 186 IPR001841 -
Lac10g0192 1056 SMART ring_2 55 95 IPR001841 -
Lac10g0192 1056 FunFam Probable Transcription elongation factor S-II 985 1056 - -
Lac10g0192 1056 SMART Cys4_2 1016 1055 IPR001222 GO:0003676(InterPro)|GO:0006351(InterPro)|GO:0008270(InterPro)
Lac10g0192 1056 MobiDBLite consensus disorder prediction 241 272 - -
Lac10g0192 1056 ProSiteProfiles TFIIS central domain profile. 858 1011 IPR003618 GO:0006351(InterPro)
Lac10g0192 1056 Pfam TFIIS helical bundle-like domain 774 824 IPR017923 -
Lac10g0192 1056 CDD TFIIS_I 761 824 - -
Lac10g0192 1056 SMART PHD_3 142 187 IPR001965 -
Lac10g0192 1056 ProSiteProfiles Zinc finger TFIIS-type profile. 1014 1054 IPR001222 GO:0003676(InterPro)|GO:0006351(InterPro)|GO:0008270(InterPro)
Lac10g0192 1056 SUPERFAMILY RING/U-box 49 105 - -
Lac10g0192 1056 Pfam Ring finger domain 55 96 IPR001841 -
Lac10g0192 1056 Pfam PHD-finger 143 186 IPR019787 -
Lac10g0192 1056 MobiDBLite consensus disorder prediction 831 852 - -
Lac10g0192 1056 MobiDBLite consensus disorder prediction 303 350 - -
Lac10g0192 1056 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 199 IPR013083 -
Lac10g0192 1056 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 766 836 IPR035441 -
Lac10g0192 1056 ProSiteProfiles TFIIS N-terminal domain profile. 749 827 IPR017923 -
Lac10g0192 1056 ProSiteProfiles Zinc finger RING-type profile. 55 96 IPR001841 -
Lac10g0192 1056 ProSitePatterns Zinc finger RING-type signature. 73 82 IPR017907 -
Lac10g0192 1056 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 106 IPR013083 -
Lac10g0192 1056 MobiDBLite consensus disorder prediction 404 418 - -
Lac10g0192 1056 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 736 839 IPR035441 -
Lac10g0192 1056 MobiDBLite consensus disorder prediction 404 423 - -
Lac10g0192 1056 ProSiteProfiles Zinc finger PHD-type profile. 140 189 IPR019787 -
Lac10g0192 1056 Gene3D - 983 1056 - -
Lac10g0192 1056 MobiDBLite consensus disorder prediction 303 349 - -
Lac10g0192 1056 SUPERFAMILY FYVE/PHD zinc finger 134 189 IPR011011 -
Lac10g0192 1056 SUPERFAMILY Zinc beta-ribbon 998 1054 - -
Lac10g0192 1056 Pfam Transcription factor S-II (TFIIS) 1016 1054 IPR001222 GO:0003676(InterPro)|GO:0006351(InterPro)|GO:0008270(InterPro)
Lac10g0192 1056 SMART TFS2_5 747 826 IPR003617 GO:0005634(InterPro)
Lac10g0192 1056 PANTHER F18C1.6 PROTEIN 41 602 - -
Lac10g0192 1056 Pfam Transcription factor S-II (TFIIS), central domain 941 1003 IPR003618 GO:0006351(InterPro)
Lac10g0192 1056 CDD Zn-ribbon_TFIIS 1009 1055 - -
Lac10g0192 1056 ProSitePatterns Zinc finger TFIIS-type signature. 1018 1053 IPR001222 GO:0003676(InterPro)|GO:0006351(InterPro)|GO:0008270(InterPro)
Lac10g0192 1056 MobiDBLite consensus disorder prediction 243 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0192 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0192 Lac-Chr10:1476479 Lac4g0017 Lac-Chr4:376258 2.60E-144 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g415 . Blo16g00156 . . . Bpe13g00328 Bma06g00016 . Cmo13g01096 . . . . . . Cpe20g00095 . . . . . . . . . . . . . . . Cone2ag0788 . . . Lsi02g00146 Csa01g00629 Chy12g01471 Cme12g01913 . . . . . . . . Sed08g2145 . . Cma13g01053 . Car13g00887 . . . Bhi08g01047 Tan05g2316 Cmetu12g1391 Lac10g0192 Hepe07g2435 . . Cla04g01131 Cam04g1183 Cec01g1696 Cco01g1742 Clacu04g1211 Cmu04g1190 Cre01g1488 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008899 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22710 PF07500 TFIIS_M 3.10E-07 No_clan Lac TR