Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0201 ATGCTTAACTCAGAAAACGAGAGGAAAACAAGAAAGAGTTCAAAGGCGTTTCGGGACAAATCAGGCGAATCTGGGGCGACTGGAGGCTACAGGGACCAAACGGGGCCCGACGGGCTCGACCCTCACGCCGACCATGAGGCTCGGGCCAAAAGCCCGACCCCTTCAGCCTTGGCCCGTCCCGCTCGCCGTCATCCAGCCCCAGCCAAGATGGCGATGAAGATGGCCGCCATCAGAGCTTCCTCCATTCCCAGACATCTCCCACCTCCTTCTTCCCCATCACTTCCTTCTTCTTCCTCTCACAGATCCGATTCCAAATCCCAATTCCGTCCCATCTCCGTCGCCCTACCGGCCTCCACTACCCTCTCTCTCTTAGCCCTATTTTCTTCTCCCCACGAAGCTAGGGCTCTCAGTAAAGACCAAATCATCTCGTCTCTCAATGATGTCGAGAAGACGTTTGATCAGGTTCAAGAAGTGGGTTCGAATTTCTTTGATATTGCACAGCGGGTCATCGACTCTGCTGCAAATATTTTGAAGCCGGGCGTCGATGCGGCGCTGCCGATTGTGAAGCAGGCGGGAGAAGAGGCACTGAAGGTTGCTTCTCCAACGATTTCTGAGGCTTCGAAGAAAGCCCTAGAAGCACTTCAGGGCTCTGGCATTGACACTGAGCCTGTTCTAAGTGCTGCTAAGACAGTAGTAGGTGCAGCACAACAAACTGGTAAGGTCATTGAAGGTGCCAAGCCTATAGCTTCATCGACTGTCGAGACGATCTCTGCAGCGGACCCTCTTTTAATTGCAGAAATTGCTGGAGTCTTAGCCCTGGCATATCTCCTCTTTCCTCCAATTTGGTCTGCCATCTCTTTCAACTTTCGTGGTTACAAAGGTGAACTCTCTCCTGCTCAAACACTTGATCTAATTTCGTCGAGAAACTACTTTCTGATCGATATACGATCCGAGAAGGACAAGGATAAGTCTGGCGTTCCTCGCCTTCCTTCTAGTGCCAAGAACCAGTCAATTGCCATTCCTTCGGAAGAATTACCAAGCAAGTTGCGGGGTGTTGTCCGAAATGTAAAGAAACTAGAAGCTGAACTTTCAGCCATCAAGATTTCATATCTCAAGAAACTCAACAGAGGCTCCAATATAGTAATCTTGGGCTCGTACTCAGACTCAGCAAAAGCAGTTGCGAAAGCATTGACAGGCCTTGGCTTCAAGAACTCCTGGATTGTAACTGATGGGTTCTTAGGTAGCAAAGGTTGGTTACAGAGTCGATTAGGAACCGATACATATAAGTTCTCATTCGCAGAGATCCTTTCGCCATCCCGAGTCATCCCAACAGGAACAAAACGTTTCGGAACGACCTCACTGACATCTGCATCTGGTCAAAAATTGCTTCCTGGAAACCTAGTGAAGGAAGCAATGGAAGCAAAGCATGAAGATGAAGAGGATTTAAGGATAGCCATTGTATCTGCTATACTTATGGCGGCTGTTGCTTCTGGTGGCGCAGCAGCCAATGCAGTAGATGAGAGTGATGACAGTGAGGACACAGGAGTTGAAAATGGCGAAATGGCGCCACTCCTTGCGGATGTTGGCCAGAATTCCGCCCTTGCAGGACTTGCAGTCGTAGCACAGAGTGTTCTGGTTGTTGCTCCAGGCGGTGCAGTCGGTGTCCGGCACTGCTGGCCCTGTTTTTGGGACCGTCCAGAATGTTGCGTTCTTGAACTCGAACCCACAGTAGGTCGGTGGCTTGCAGCAACCAGACTGCAAACAAATTATTCAAATTGGTTTAGAGAAGATGAAGATTGGTCGTGGAAGCTCATCAGATACGATAGAACAAGAAAGAACAAGCGTGTGAAACGAAGACTTTGA 1863 49.54 MLNSENERKTRKSSKAFRDKSGESGATGGYRDQTGPDGLDPHADHEARAKSPTPSALARPARRHPAPAKMAMKMAAIRASSIPRHLPPPSSPSLPSSSSHRSDSKSQFRPISVALPASTTLSLLALFSSPHEARALSKDQIISSLNDVEKTFDQVQEVGSNFFDIAQRVIDSAANILKPGVDAALPIVKQAGEEALKVASPTISEASKKALEALQGSGIDTEPVLSAAKTVVGAAQQTGKVIEGAKPIASSTVETISAADPLLIAEIAGVLALAYLLFPPIWSAISFNFRGYKGELSPAQTLDLISSRNYFLIDIRSEKDKDKSGVPRLPSSAKNQSIAIPSEELPSKLRGVVRNVKKLEAELSAIKISYLKKLNRGSNIVILGSYSDSAKAVAKALTGLGFKNSWIVTDGFLGSKGWLQSRLGTDTYKFSFAEILSPSRVIPTGTKRFGTTSLTSASGQKLLPGNLVKEAMEAKHEDEEDLRIAIVSAILMAAVASGGAAANAVDESDDSEDTGVENGEMAPLLADVGQNSALAGLAVVAQSVLVVAPGGAVGVRHCWPCFWDRPECCVLELEPTVGRWLAATRLQTNYSNWFREDEDWSWKLIRYDRTRKNKRVKRRL 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1551527 1556005 - Lag0024246.1 Lac10g0201 582732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0201 620 Gene3D - 293 432 IPR036873 -
Lac10g0201 620 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 83 425 IPR044690 GO:0009704(InterPro)|GO:0071277(InterPro)|GO:0090333(InterPro)
Lac10g0201 620 ProSiteProfiles Rhodanese domain profile. 306 427 IPR001763 -
Lac10g0201 620 MobiDBLite consensus disorder prediction 1 107 - -
Lac10g0201 620 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 295 414 IPR036873 -
Lac10g0201 620 CDD RHOD 300 414 - -
Lac10g0201 620 MobiDBLite consensus disorder prediction 1 19 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0201 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0201 Lac-Chr10:1551527 Lac5g1605 Lac-Chr5:32580271 1.10E-09 dispersed
Lac10g0201 Lac-Chr10:1551527 Lac8g2691 Lac-Chr8:44397339 4.10E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g389 . . . . . . . . Cmo13g01091 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00153 Csa01g00637 Chy12g01465 Cme12g01908 . . . Bda14g00903 . Bpe15g00555 . . Sed01g2262 . . Cma13g01050 . Car13g00883 . Cpe09g01146 . Bhi08g01041 Tan05g2307 Cmetu03g1392 Lac10g0201 Hepe07g2429 . . Cla04g01122 Cam04g1175 Cec01g1687 Cco01g1735 Clacu04g1203 Cmu04g1182 Cre01g1480 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0201 . 94 385 Sulfurtransferasese/Rhodanese AT5G23060 58.8 9.7e-79 291.2
Lac7g0152 . 76 488 Sulfurtransferasese/Rhodanese AT4G01050 52.6 7.0e-111 398.7
Lac3g3029 . 6 609 Sulfurtransferasese/Rhodanese AT1G09280 64.9 6.8e-227 784.3
Lac13g1260 . 107 500 Sulfurtransferasese/Rhodanese AT2G40760 67.7 7.9e-149 524.6
Lac8g0811 . 87 420 Sulfurtransferasese/Rhodanese AT1G17850 68.2 7.3e-144 508.1
Lac1g0798 . 31 219 Sulfurtransferasese/Rhodanese AT2G42220 79.4 6.8e-85 311.2
Lac10g3219 . 417 628 Sulfurtransferasese/Rhodanese AT3G08920 56.9 2.5e-65 246.1
Lac3g0132 . 124 418 Sulfurtransferasese/Rhodanese AT4G24750 67.7 1.6e-112 403.3
Lac9g2776 . 67 249 Sulfurtransferasese/Rhodanese AT5G19370 63.0 1.7e-64 243.8
Lac5g1255 . 113 464 Sulfurtransferasese/Rhodanese AT5G55130 72.4 1.6e-149 526.6
Lac5g3071 . 69 241 Sulfurtransferasese/Rhodanese AT4G27700 83.2 1.8e-79 293.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010320 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32